Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01716 TCTTTCCACTCTCACAGAAAAGAGAGAGAAAGGAAGAAGCAGAGACATAAAGGGAGAGAGAAAGAGAAGCAGAGAGAGACAGAGAGAGAGTTCTTGAGAGAGAGAGAGAGAGAGAAGGACCGTTAATTTCCGTTAATATATGAAGCAATTTTGAGAGCTACAAGAAGCTAAAATGGTTACAGACCAAGAGCTTTCTCAAGCTATACAATGTCTTCTTCGCGACTCTGCTTCTGCTACAAACCCTAACCCTCTTTCTTCCTTAAACGCTGTCGTTCAGGAGTTGCAGACCAAGCTTGGCCTTGACCTCTCTCATAAGGTCGATTTCATTCATGCCCAGATCCAATTTATCCTTCGTTCTCATCCTCAACAACCCCATCCGTATCATCATCACCACCATCAACAACTACCCTCTTCGCAGAAAGACCTCTTTGCCCTTCATCAAAGCCCTAATTTCCAATCTGCGCCTTCCCCTACTTCCTCTGCTTTTCACACTTTCACTGCTCAGCTTCCGCCGGCCAAGGCGGAATCCGCCGTCTCTCCCACTGTTCCGGGTTCTGACCCGCCAAAGGAAAGTACTCAAACCAAAACTAAGAGAAGAGGAGGCCCGGGGGGTCTAAACAAGCTTTGTGGTGTTTCTCCTGAACTTCAGGCTATTGTTGGCCAACCAGAATTGCCAAGAACTGAGATAGTGAAACAGCTATGGGCGTACATCAGAAAAAACAACCTACAGGATCCAAGTAACAAGAGGAAAATAATATGCAATGATGAGTTGCGGTTGGTATTTGAAACAGACTGCACTGACATGTTCAAAATGAATAAGTTGCTAGCCAAACACATCATTCCTCTCGAACCTACTAAACCATCAAGTTCTAAGAAGGCTCGAGTGGAGAATGAATCTGCAGTTGGTGTAAAAGGTGCAGAACCCAGTATATGTCCTTCTGTGATTATATCTGAAGCTCTAGCAAATTTTTTTGGTGTCGACGGAAGGGAGATGCTCCAATCAGAGGTTCTGAGACGCATATGGGAATACATAAAAGTGAATCATCTTGAGGACCCTCTGAACCCGATGGCGGTCTTGTGCGATGGAAAACTTCGAGAACTGTTTGGTTGTGAAAGCATTTCTGCACTGGGAATCCCAGAAGTTTTAGGCCGCCACCATATATTTAGGAGATCATGATAGCTAATCTTCTAGGATGTTGCAGATCGAACGGTGTTAGCGACTTACATATCGGGGCAGTGTTTGGAAAAGTCTGGTTTTTTTCACCCTTCCCTCTCTTAATGTTGTAATCAGTAATGATAATATTTTACTTTTGGATCTTATGGTAAGGTAAAGGTGTGAACTTGGGGAAGTAAGATGAAGTAAGATGGGGGCTTGTGGCAGAGTTTATTTTGCAATTGCCTGCCAAGTCCTTGGGTTTCCATTTGTCTGACTTGGTATTTAGGATAGAGTGACCCTGAGAGTTTCTAACATCCATCATACACTACAGATGATGGGTAAAGTAAAAT 1506 43.76 MVTDQELSQAIQCLLRDSASATNPNPLSSLNAVVQELQTKLGLDLSHKVDFIHAQIQFILRSHPQQPHPYHHHHHQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFTAQLPPAKAESAVSPTVPGSDPPKESTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVGVKGAEPSICPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDGKLRELFGCESISALGIPEVLGRHHIFRRS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46517213 46521633 + XM_039044246.1 Bhi09g01716 44333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01716 334 Pfam SWIB/MDM2 domain 152 222 IPR003121 -
Bhi09g01716 334 Pfam SWIB/MDM2 domain 258 328 IPR003121 -
Bhi09g01716 334 SUPERFAMILY SWIB/MDM2 domain 251 329 IPR036885 -
Bhi09g01716 334 PANTHER - 127 330 - -
Bhi09g01716 334 PANTHER - 1 83 - -
Bhi09g01716 334 MobiDBLite consensus disorder prediction 113 150 - -
Bhi09g01716 334 Pfam DEK C terminal domain 2 59 IPR014876 -
Bhi09g01716 334 Gene3D SWIB/MDM2 domain 252 333 IPR036885 -
Bhi09g01716 334 Gene3D SWIB/MDM2 domain 143 233 IPR036885 -
Bhi09g01716 334 CDD SWIB-MDM2_like 257 328 - -
Bhi09g01716 334 ProSiteProfiles SWIB/MDM2 domain profile. 147 224 IPR003121 -
Bhi09g01716 334 CDD SWIB-MDM2_like 152 222 - -
Bhi09g01716 334 ProSiteProfiles SWIB/MDM2 domain profile. 252 331 IPR003121 -
Bhi09g01716 334 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 83 - -
Bhi09g01716 334 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 127 330 - -
Bhi09g01716 334 SUPERFAMILY SWIB/MDM2 domain 141 227 IPR036885 -
Bhi09g01716 334 SMART swib_2 148 227 IPR019835 -
Bhi09g01716 334 SMART swib_2 253 334 IPR019835 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01716 K15223 UAF30, SPP27; upstream activation factor subunit UAF30 - csv:101217066 616.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g01714 Bhi-Chr9:46517212 Bhi09g01716 Bhi-Chr9:46517213 0 dispersed
Bhi09g01716 Bhi-Chr9:46517213 Bhi10g02236 Bhi-Chr10:58072913 7.42E-45 dispersed
Bhi09g01715 Bhi-Chr9:46517213 Bhi09g01716 Bhi-Chr9:46517213 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g593 Blo03g00535 Blo03g01462 Bda07g00384 Bda09g00413 . Bpe08g01108 . . . . Cma01g01104 . Car01g00976 . . . Cpe02g00797 Bhi09g01716 . . . . . . . . . . . . . Cone6ag0039 Cone9ag0041 . . Lsi02g01868 Csa07g00991 . . . . . . Bpe11g00562 . Bma07g01280 Bma14g00318 . Cmo01g01150 . . . . . . . . . . . . . . Cla09g02037 Cam09g2126 . . . . . . . Chy01g01071 Cme01g00979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004875 2 3 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1913 PF02201 SWIB 4.90E-18 No_clan Bhi TR