Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01751 GAGGAAGCTTGGAGAGAATTGACATTCTGAGAAAAATCAAAGAGCTAACAAGATCTATGATCGTCGAACTGAGCAATGGAAGCTCCAAGATGATCGCCATCGATCGTTTCAAAAGTTACTGCACCAATTCCCTTGAAAACTGGTCTCCTGGATCGTATCGGAGGCCAAATCAATCGTCGCTAACAAAATCCTGCAACAAATAAGTTTGTTGTAGGTTCAATTTATCTGAAGGGAAGGAGATTCTAACACTTCAAAGGGAAAGCCATGTCCGCAGACTAGATGTCTTGCTTAGAGTTCTACTCATTATTCAGCAGCTTCTGCGAGAAAATAGACATAGCTCAAAGAGAGATATATATTATATGCATCCCTCTGTATTTACAGGTCAAGCTAACCCACCGTTTTGTTCTAAGATATAACATCTTTCAACGATTAATTAGCAGTCCAGTTCAGAAGAATCGAATTTCAACACATCCTTCAAATTTATGTTTTCAGCAAGTTTGTGGCAGGAGATTTTCTGAGCATTTCCTTGTTTTGCTGTATAATGACGAATATTTTGCAGATCAATCAGTCGTTGACCGGGCAATCAATGATATCTGCATTCTTTTGCAATGTAGCCGGCATAATCTGAATGTGGTTTCTGTTGGTAATGGGTTGGTGATGGGTTGGTTGAGGTTCTCAGAAGCTGGCTGGAGATTTGATTGCATAAAGAAGCCTAACAGTGCCCACTTTATTCCTGTTCAAGTTGAAGAAGTCACAGATATTGCTAGTCCTGCGGATTACATACTCGTTGTTGAGAAAGAATCAGTTTTTCAGCGTTTGGCAAATGATCGGTTCTGCAGCAAAAACCGGTGCATTGTAATCACGGGACGTGGATATCCAGATGTTCCCACTAGAAGGTTTTTGCGGCTTCTCGTTGATGTTTTGGCCTTGCCTGCATTTTGTTTGGTAGATTGTGATCCATATGGTTTTGACATTCTGACAACATATCGATTCGGTTCTATGCAAATGGCCTACGATGCGAAGTATCTCAGAATCCCACAACTACACTGGCTTGGAGCTTTTGCTTCAGATTCTGAGAAATACAATCTACCAGAACAATGTCTCATCCCATTGACTTTGGAGGACACGAGGAGAACTGAAGCTTTGTTAAAGAGATGCTACTTGCGGAGAGAGGTACCACATTGGAGGTTGGAGTTGGACTCAATGCTGCAAAGAGGTGTGAAATTTGAGATAGAAGCATTATCTGTGCACAATATTTCCTTTTTGTCAGAGAAGTATTTACCATCCAAAATAGAAAGTGAACTAACTGGTAAATTCTAGGTGATTGTTAGACCCATACACTCTTCCAACATTAGTAGTACTTTTACCCAGATCATGGATCTTTCATGCGAATGATTAGGTTTAAGTCAAAGATGGTGAAACTGAATGGAGTTCTTCTGATGTACACTGTTAGAGTAGGACAAATTCCTCGAATTTTTCCAGCAATTAGGGGAAGCTTGAATTCATAAATTGATGGGCAATTTTCTTTGAAGGGTGTAAGTAGACATATGACAAAAGAGATTAAAATGATCAAAACCAACAAAACTGATCATTCAAATCCATCTGAATCGAAATGTTTGGCCTTTTTTTCCCAGATATTATAGTTCATATCAAATTATAAGTTTAGTCTGAGCATTCAAGTTAGTGTTTAAAAAGTTAGAGTCCCGTTTGATAACCATTTTGTTTTATGTATTTTAAAATTAAGTCTATGGACACTACTAACAGCTCCAAATTTCTTTCTTTGTTATCTACTTTTCATAAAAACCAAACTAAATTTTGGGAATTAAAAAAGTAACTTTCAAAAAGTTATTTATGTTTTTGGAATTTGGCTTAAAATTCAACCATTGAACTTAAGAAAGTTGCAAA 1905 37.64 MSCLEFYSLFSSFCEKIDIAQREIYIICIPLYLQVKLTHRFVLRYNIFQRLISSPVQKNRISTHPSNLCFQQVCGRRFSEHFLVLLYNDEYFADQSVVDRAINDICILLQCSRHNLNVVSVGNGLVMGWLRFSEAGWRFDCIKKPNSAHFIPVQVEEVTDIASPADYILVVEKESVFQRLANDRFCSKNRCIVITGRGYPDVPTRRFLRLLVDVLALPAFCLVDCDPYGFDILTTYRFGSMQMAYDAKYLRIPQLHWLGAFASDSEKYNLPEQCLIPLTLEDTRRTEALLKRCYLRREVPHWRLELDSMLQRGVKFEIEALSVHNISFLSEKYLPSKIESELTGKF 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47540524 47549680 + XM_039043868.1 Bhi09g01751 44368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01751 346 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 90 340 - -
Bhi09g01751 346 Gene3D - 123 342 - -
Bhi09g01751 346 PRINTS SPO11 homologue signature 87 107 IPR013048 GO:0003677|GO:0003918|GO:0042138
Bhi09g01751 346 PRINTS SPO11 homologue signature 182 197 IPR013048 GO:0003677|GO:0003918|GO:0042138
Bhi09g01751 346 PRINTS SPO11 homologue signature 229 248 IPR013048 GO:0003677|GO:0003918|GO:0042138
Bhi09g01751 346 PRINTS SPO11 homologue signature 264 288 IPR013048 GO:0003677|GO:0003918|GO:0042138
Bhi09g01751 346 PRINTS SPO11 homologue signature 325 344 IPR013048 GO:0003677|GO:0003918|GO:0042138
Bhi09g01751 346 Gene3D - 62 121 IPR036388 -
Bhi09g01751 346 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 90 340 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bhi09g01751 346 PRINTS DNA topoisomerase VI subunit A family signature 95 112 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bhi09g01751 346 PRINTS DNA topoisomerase VI subunit A family signature 113 128 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bhi09g01751 346 PRINTS DNA topoisomerase VI subunit A family signature 168 185 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bhi09g01751 346 PRINTS DNA topoisomerase VI subunit A family signature 192 213 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bhi09g01751 346 PRINTS DNA topoisomerase VI subunit A family signature 224 240 IPR002815 GO:0003677|GO:0003918|GO:0005694
Bhi09g01751 346 SUPERFAMILY DNA topoisomerase IV, alpha subunit 89 340 IPR036078 GO:0003677|GO:0005694
Bhi09g01751 346 CDD TOPRIM_TopoIIB_SPO 166 328 IPR034136 -
Bhi09g01751 346 Pfam Type IIB DNA topoisomerase 87 118 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01751 K10878 SPO11; meiotic recombination protein SPO11 - csv:116405044 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01661 Bhi-Chr3:34807561 Bhi09g01751 Bhi-Chr9:47540524 1.19E-65 dispersed
Bhi09g01751 Bhi-Chr9:47540524 Bhi09g01753 Bhi-Chr9:47540698 0 dispersed
Bhi09g01750 Bhi-Chr9:47535094 Bhi09g01751 Bhi-Chr9:47540524 3.97E-166 tandem
Bhi09g01751 Bhi-Chr9:47540524 Bhi09g01752 Bhi-Chr9:47540524 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g649 . Blo03g01480 . . . Bpe08g01095 . . . . . Cma09g01003 . Car09g00914 . Cpe06g00811 . Bhi09g01751 . . . . Mch11g1260 . . . . . . . . . . . . Lsi02g01841 Csa07g00937 . . . . . . . . Bma07g01249 . . . Cmo09g01003 . . . . . . . . . . . . . Cla09g02064 Cam09g2153 Cec09g2218 . . . . . . Chy01g01164 Cme01g00928
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005619 0 4 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 3 1 1 40