Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01762 AAATGAGAAAGTCGTTACAAGAAGATGATGAGGGAGAAATTGCCAGGATTTCCACGCGCGATTTAAGATTAGGGTTTCTTTCTCTCTTCTCTCTCTTTTTTCAGCTGCTCTTCTTCCCTAATTGGGGATTCGATCTCCGAGTTTTAACTTCCTCTTCCTTACTTTGAAATTCGTTTCCTAACTGCTTCCATCGGCTTTCTGATTTTACCTGCATTCAATTTCTGAATTTGAATGAATCTCTAGAGGGGGTTGTTGAAGAAGGTAGAAATGGATGAAAGTGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCATCGGAACGAGGCCATTTCAGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATACGAGGACTTGTATAACGATGTTAATGTTGGGGAAGGGTTCCTTCAGTCGTTGAGGAAGAACGATGATTTGGGATTCAAAACCGAGGAGCCCAAGATGGAGCCTCCTGCACCTGCACCACCCAGTTCCGGTGCTTCCATACCTGGTGTTGGTGGAGGTGCGACTGAAGTTGCTGGTTTAGGAGATGGTGGGCACAGTGTTTCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATATAAGAGCGAATGAGATGGCTATCAGAGGTGGGGCGGGACCGGGGCCGCCTGTAGGCGGCGGAGGTGGGATTAGGGTTGAATTAGGGCAAGGGAGTAAAACCAATGAGTTGGAGGAGCGAAGCAATAATAACATAGCTGCGCATCAGGCTCCGCAGCAGCAACAGCCACAGCTGCAGGCGCAGCCACAGCCGCAACACCACCACCAACCACCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTTTGCTAAGGCAAGGAGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTTCGGTAACATGGGGAGTGCAGGGGGAGGTGGTGGTGGAACGATTTTGTTTGTTGGTGATTTACATTGGTGGACTACAGATGCGGAGCTGGAGGCAGAACTCTGTAAGTATGGTCCGTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAGGGCTATTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGGCATATTTTTAATGGACGTCCATGTGTTGTTGCATATGCATCACCCTTTAGTGTTAAGAGGATGGGAGAAGCCCAAGTGAATAGGAACCAACAGATGTCCCAAGCTACTAATCCTCAAGCAAGGAGGGGTCCTAATGATGCTGTAGGTAAAATTGGTGGAAGTAACATTGCAACCGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAATTGGGGAAGAGGTAATGCACATGGAATGGGAGGTCGAGGACCAGCTGGTCCAATGAGGAGTAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAACGGATTTGGACAAGGAATTGGTGCTGCCCCTCCTTTATTACATCCGCAATCAATGATGGCCCAAGGTTTTGATCCATCTTTTGGTGCACCTATGGGAAGAATGGGCACATATGGTGGTTTTCCTGGAGCTCCGGCTCCCCCTTTCTCTGGAATTTTATCGTCCTTTCCTCCTGTTGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGGGGTATGCCTATGAATGGAATGGGCATGATGCCAACATCGGGTGTTGATGGACCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAACATGGTGGTGGGAGAGCTGACGAGTCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCAATATGGTGAAGGCAGTCATGACAGAGGGGCATGGGCAAATTCAACAAAGGAGAAAGATAGAGGCTCCGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGATGTTGGATATGATAGAGAGAGATCCAAAGAAAAAGATCCGGGGCCTGACCATGATTGGCCAGATAGGAGGCCACGTGATGATAGAGATATAGGGCGTGAAAGGGATAAAGATAGGGACCGAGATAGGGATAGAGAACGATCTCGAGATTATGAGCGTGGTCATCATGACCGTGATCGTGAACGTGACAGAGATCGTGACCGTGATAGGTACAAGGAAGATAGGGATAGATATTCTGATCATCATAGGTACAGAGACCGGGAACCAGAGCATGAGGAGGATTGGGAAAGGGGACGGTCATCAAGGACGCATAGCAAGTCCCGATTATCACAAGAAGAAGAAAATCGTTCTAGAACAAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCTGAATAGTTGAATCATTCAGCATACATGCTTTAAACTTTATAGAGAGCGCAGTCTGATTTGGTGCAGAAAAAAACTTAAAAGGATATTTGATAGTGAGGATTTCTTTCAGTGGAACAAAAGTTGGTTTGGGGACAGCAACGGGGGCTTTTAAATTCTCGTCTGCATAGAGAGAACCCATGCATGGCAATGCCTTCTCGCTCTATTAATTTGATAAAGAAACTTCTTGGTTAAAACTTCTCACGTTTCTTTTGAATGATGTTTCTTCTTGACTTCTTGGCACTTGATGATATTGATATTCTTGTTGTAATGGCTAAATATTGCTGGAGTCTTAGTCATGTCTGAATGTTTTCAGACATGTAATGGCTTACTATGTTGTTAGAGTATCTTAGCCTGGAGGATGTTGTATTGTGCGTTATTCTGTGTTATGAGCTGTTGTATCATATATTCACACCTCTTTCCATTCCTTCTTGTTTTCTTTGATACCACACCTTAGTCATTCTATTGTGAAGATGTAGAGCTAACCATTCTTTTAGAGCTGTTTCTTTACCCTTTAGAGGTTGTATGTACCTGTTACCAATTCACTAAATGTAGTTCTCAAAGGTTGTTTGTACT 3015 45.8 MDESEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKNDDLGFKTEEPKMEPPAPAPPSSGASIPGVGGGATEVAGLGDGGHSVSERVTEGYNQIPDIRANEMAIRGGAGPGPPVGGGGGIRVELGQGSKTNELEERSNNNIAAHQAPQQQQPQLQAQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGGGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNDAVGKIGGSNIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGIGAAPPLLHPQSMMAQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGSDQQYGEGSHDRGAWANSTKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRYSDHHRYRDREPEHEEDWERGRSSRTHSKSRLSQEEENRSRTRDADYGKRRRLTSE 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 47931462 47936319 - XM_039041410.1 Bhi09g01762 44379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01762 713 MobiDBLite consensus disorder prediction 58 107 - -
Bhi09g01762 713 SUPERFAMILY RNA-binding domain, RBD 235 332 IPR035979 GO:0003676
Bhi09g01762 713 CDD RRM_CFIm68_CFIm59 238 311 - -
Bhi09g01762 713 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 314 IPR000504 GO:0003723
Bhi09g01762 713 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 712 - -
Bhi09g01762 713 MobiDBLite consensus disorder prediction 552 713 - -
Bhi09g01762 713 MobiDBLite consensus disorder prediction 167 198 - -
Bhi09g01762 713 SMART rrm1_1 237 310 IPR000504 GO:0003723
Bhi09g01762 713 Gene3D - 159 334 IPR012677 -
Bhi09g01762 713 MobiDBLite consensus disorder prediction 167 213 - -
Bhi09g01762 713 MobiDBLite consensus disorder prediction 503 713 - -
Bhi09g01762 713 MobiDBLite consensus disorder prediction 126 147 - -
Bhi09g01762 713 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 712 IPR034772 -
Bhi09g01762 713 MobiDBLite consensus disorder prediction 324 340 - -
Bhi09g01762 713 MobiDBLite consensus disorder prediction 355 373 - -
Bhi09g01762 713 MobiDBLite consensus disorder prediction 324 419 - -
Bhi09g01762 713 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 307 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01762 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 - csv:116401617 912.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g01762 Bhi-Chr9:47931462 Bhi09g01765 Bhi-Chr9:47984231 0 dispersed
Bhi09g01762 Bhi-Chr9:47931462 Bhi09g01763 Bhi-Chr9:47931462 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g660 . Blo03g01482 Bda07g00411 Bda09g00437 . Bpe08g01092 . . . . Cma01g01076 Cma09g01007 Car01g00952 Car09g00919 . Cpe06g00817 Cpe02g00822 Bhi09g01762 . . . . Mch11g1266 . . . . . . . . . . . . Lsi02g01829 Csa07g00874 . . . . . . Bpe11g00588 . Bma07g01247 Bma14g00681 . Cmo01g01121 Cmo09g01010 . . . . . . . . . . . . . Cla09g02076 Cam09g2161 Cec09g2227 . . . . . . Chy01g01147 Cme01g00911
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002318 2 3 2 2 2 2 2 2 2 1 2 2 3 2 2 3 2 2 3 2 3 1 1 2 2 2 2 2 2 1 61