Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01791 TGTCAATGTCTTCCTTATATTTTCTGTAGCCCAAAATTAGTCGTTCCTTCACTTTGTAGTTCCAGGTTTCGCCGAGGGATTTCAATCAGCCAAGAAATTGGTATATTTCACCTTGTTTCATTAAGCATCTTCTCTAATTCAATGGCTGCTGCCAAGTTCAACAAGAAGAAGGGTGTGAAACAGGACGACCCTCCATCGAAAAGGAAGGAGAAGGACGAGCTCTTCACACCTAAACGTTCTAAGGAGGAAGATGATGATTCTGACCTTTCTGATGCTCTGGATGAGGACGAAGTAGACAATGGAATCATTGATGGTGACGAAGAAGACGAAGAAGGATCTGGGTCTGGTTCTGAAGATTCTTCTGATGGTGATGACCCTTTGGCTCATGATTTCCTCCAAGGAAGTGACGAAGAGAATGATTCAGGCTCGGTTTCAAGTTCTGATTCTGATGAAACTGACATCGAAGACAAGTCGAGAATCATCGATGAAAAAAGGGCGAGGGAAGAAAAAGATGCAGCGGATGAAATGCAGCTTAATATTAAAGAAGAATCCGACGAGTTCAGATTACCAACCAAGGAGGAACTTGAAGAGGAGGCGCTTAGACCTCCTGACCTTTCAAATTTACAAAGGCGGATAAGAGAGATTGTTCGAGTTCTTTCGAATTTCAAGGCTCTTAGGCAAGAGGGAGCAACGCGTAAGGATTATGTTGAACAACTTAAGAAAGATATTGGTTCATACTATGGGTACAACGAATTTCTTATTGGGGTGCTGGTTGAGATGTTTCCAGTAGTTGAGCTAATGGAACTTATTGAAGCTTTTGAAAAGCCTAGACCGATATGTTTGCGGACCAACACCTTAAAGACAAGGAGGCGGGATCTGGCAGATGTTCTGATTAACAGAGGTGTAAACCTAGATCCTTTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATTGGAGCAACTCCTGAATATATGGCTGGTTTTTACATGCTACAAGGCGCAAGCTCCTTTCTGCCTGTGATGGCTCTTGCTCCTCAGGAAAAAGAACGAATTGTTGACATGGCGGCAGCACCTGGTGGTAAAACTACTTACATAGCGGCACTCATGAAAAATAGTGGTATAATATTTGCAAATGAGATGAAAGCACCAAGATTGAAGTCACTTACCGCAAATTTACATCGGATGGGAGTGACAAATACTGTTGTCTGCAACTATGATGGGAAGGAGCTCCCGAAAGTTTTGGGTGTGAATACAGCAGATAGAGTTCTATTAGATGCCCCTTGCAGTGGATCTGGAGTTGTATCTAAGGATGAATCTGTTAAAACCTCAAAAAGCTTGGAAGAAATCCAGAAATGTGCTGAGTTGCAGAAGCAACTTATACTTGCTGCAATTGACATGGTCGATTGCAATTCAAAATCTGGGGGATATGTTGTTTACTCCACGTGCTCCATAATGGTTGATGAGAATGAAGCAGTTGTTGACTATGCCCTTAAAAAGAGGGATGTGAAGCTTGTGCCATGTGGCCTTGATTTTGGACGTCCCGGATTTATACGGTTCAGGGAAAAGCGTTTTCACCCATCTTTGGAGAAGACAAGACGTTTCTACCCCCATGTCCACAACATGGATGGTTTTTTTGTGGCAAAGTTCAAGAAAATGAGCAACAAGATTTCAACTGCACGATCTTCAGAATCATTGGAAGAGGCTGTGGAAGAAGATAATGACGCAGGGAAGAGCGGAAATGAGAAGAACGATGGTGAATGTCTTCACCCACAAGTAAATGACAGTAAAAAGAGGAAGAAGGTTTCACAAAATCACGATGTCGGAAATGGCAAAGAATCCAAGCCCACTGTGGAAAAGAGGAAGAAGAGAAAATTTCCTTCAAGAGAGGAAATTGCAAGAGCTAGGGAGGAAAAACGACAAGCTCTGAGGGAAAAGAAAGCTGGGAACAAGAAAGTGTAAAACTTGAAATCTAATCATTTGAGGTACATGTTAAGGATCGACTAGTCGATATACATGGTAATTCTATAATAGAGTGAAATCAAGTGATGTTTATTGAGCACCTAAAGTCTCTGCTCAACTGTGGAAAGAAATATTCTTGTATGAAATGTCCAATTTTGTTAGCTAACGATTCATGTAGGAGGATCATTCTCATCACATGTTTGCTTTCTAATTATATTTTTATGATGAATTATTTGTTCTTTATAGCCTATCAATTTGATGAGGCCATGGTGTTTCCTCAGAAATTAGTA 2267 41.16 MAAAKFNKKKGVKQDDPPSKRKEKDELFTPKRSKEEDDDSDLSDALDEDEVDNGIIDGDEEDEEGSGSGSEDSSDGDDPLAHDFLQGSDEENDSGSVSSSDSDETDIEDKSRIIDEKRAREEKDAADEMQLNIKEESDEFRLPTKEELEEEALRPPDLSNLQRRIREIVRVLSNFKALRQEGATRKDYVEQLKKDIGSYYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKAPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGVNTADRVLLDAPCSGSGVVSKDESVKTSKSLEEIQKCAELQKQLILAAIDMVDCNSKSGGYVVYSTCSIMVDENEAVVDYALKKRDVKLVPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKFKKMSNKISTARSSESLEEAVEEDNDAGKSGNEKNDGECLHPQVNDSKKRKKVSQNHDVGNGKESKPTVEKRKKRKFPSREEIARAREEKRQALREKKAGNKKV 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48635898 48641705 - XM_039041967.1 Bhi09g01791 44408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01791 611 MobiDBLite consensus disorder prediction 8 39 - -
Bhi09g01791 611 MobiDBLite consensus disorder prediction 40 71 - -
Bhi09g01791 611 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 222 511 IPR001678 GO:0008168
Bhi09g01791 611 PRINTS RNA (C5-cytosine) methyltransferase signature 282 296 IPR023267 GO:0001510
Bhi09g01791 611 PRINTS RNA (C5-cytosine) methyltransferase signature 311 321 IPR023267 GO:0001510
Bhi09g01791 611 PRINTS RNA (C5-cytosine) methyltransferase signature 379 391 IPR023267 GO:0001510
Bhi09g01791 611 PRINTS RNA (C5-cytosine) methyltransferase signature 433 449 IPR023267 GO:0001510
Bhi09g01791 611 PRINTS RNA (C5-cytosine) methyltransferase signature 493 510 IPR023267 GO:0001510
Bhi09g01791 611 PANTHER BNACNNG49010D PROTEIN 47 584 - -
Bhi09g01791 611 MobiDBLite consensus disorder prediction 581 603 - -
Bhi09g01791 611 Gene3D Sun protein; domain 3 188 295 - -
Bhi09g01791 611 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 234 510 IPR011023 GO:0003723|GO:0006396|GO:0008757
Bhi09g01791 611 Gene3D Vaccinia Virus protein VP39 298 603 IPR029063 -
Bhi09g01791 611 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 47 584 IPR023267 GO:0001510
Bhi09g01791 611 Coils Coil 119 139 - -
Bhi09g01791 611 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 218 295 IPR031341 -
Bhi09g01791 611 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 196 510 IPR029063 -
Bhi09g01791 611 Coils Coil 590 610 - -
Bhi09g01791 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 185 205 IPR023273 GO:0008168
Bhi09g01791 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 218 230 IPR023273 GO:0008168
Bhi09g01791 611 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 241 254 IPR023273 GO:0008168
Bhi09g01791 611 MobiDBLite consensus disorder prediction 1 127 - -
Bhi09g01791 611 MobiDBLite consensus disorder prediction 75 89 - -
Bhi09g01791 611 MobiDBLite consensus disorder prediction 103 127 - -
Bhi09g01791 611 MobiDBLite consensus disorder prediction 519 611 - -
Bhi09g01791 611 Pfam 16S rRNA methyltransferase RsmB/F 299 509 IPR001678 GO:0008168
Bhi09g01791 611 MobiDBLite consensus disorder prediction 530 575 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01791 K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase [EC:2.1.1.310] - csv:101211286 1008.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01169 Bhi-Chr3:23806443 Bhi09g01791 Bhi-Chr9:48635898 8.91E-15 dispersed
Bhi09g01791 Bhi-Chr9:48635898 Bhi09g03105 Bhi-Chr9:79824020 7.42E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g696 . . Bda07g00417 . . . . . . . . . Car01g00943 . Sed04g3639 . . Bhi09g01791 Tan01g3207 Cmetu01g1798 . . Mch11g1292 . . . . . . . . . . . . . . . . . . . . Bpe11g00594 . . . . . . . . . . . . . . . . . . . Cla09g02088 Cam09g2175 Cec09g2241 . . . . . . Chy01g01130 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42