Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01823 TGTACGAATCTGAATCTGCGTTTTTGGTGTGTTTGTTGAAATGCTGTACTGTGGTTCTGTGGTTCTGTGTTGGTTAGGACTGTCGTTCTGCTGCCGTACGGATGAGATTTAAGATTCTGGGCATGGGCTCTGCTTCAGCTGTTGATTTAATAGAGGCCTCCTCTGGCGTGCATTTTTCTGGACTTCTTATGGATAGAAAACAACAAAATGGACATACAAGGAGCTTGATGTCAGAAACTGAAAAATTTCATAAACAACCGTTTGTCATTGGGGTTGCTGGTGGTGCGGCCTCTGGAAAGACAACAGTTTGTGATATGATCATTCATCAACTTCATGACCAGCGAGTCGTTCTTGTAAACCAGGATTCTTTCTATCATAATTTAACTCCCGAGGAACTTACACAAGTACATGAATACAACTTTGACCATCCCGATGCATTTGACACAGAGGAACTTTTAAGTTCAATGGATAAATTGAGGCATGGGGAGCCTGTAGATATTCCAAAATATGACTTCAAGAGTTACAAAAATAACGTGTTTCCACCAAGAAGGGTTAACCCTGCGGATGTTATTATTTTGGAAGGAATTCTTGTTTTCCATGACCCTCGCGTTCGAGAACTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGTTTGGCGAGAAGGATAAGGCGTGATACTGTGGAGAAGGCTAGAGACATAGCTGCAGTACTTGATCAGTATTCAAAATTTGTGAAGCCTGCTTTTGATGACTTCATACTTCCTACAAAGAAGTATGCTGATATCATCATTCCCAGAGGAGGTGATAATCATGTAGCCATTGATTTGATTGTACAACATATTCGCACAAAGCTTGGACAGCATGATCTTTGTAAAATATACCCTAATTTATATGTCATCCAGTCAACCTTTCAGATAAGAGGTATGCATACATTAATTCGAGATGCTAAAACTACAAAGCATGATTTTGTGTTTTATGCTGATCGATTGATTCGACTGGTTGTTGAGCATGGTCTGGGACATTTACCATTCACAGAAAAGCAGGTGACCTCTCCAACTGGATCTGTATATAGTGGTGTTGATTTCTGCAAGAGGTTATGTGGTGTCTCTGTCATCAGGAGTGGTGAGAGTATGGAAAATGCTCTGCGGGCATGTTGTAAAGGGATAAAAATTGGAAAGATTCTCATTCATAGGGAGGGTGATAATGGTCAACAGTTAATTTATGAAAAACTACCCTCGGATATCTCCAACAGGCATGTATTACTATTGGATCCCATCCTAGGCACAGGAAACTCGGCAGTGCAAGCTATTTCTTTGCTCATAAGTAAGGGTGTTCCAGAGCCTAATATTATATTTCTCAATCTCATATCAGCACCTCAAGGCTTACATGTGGTGTGTAAACGTTTCCCAAGAATAAAGATTGTGACATCTGAAATTGAGATCGGTCTGAATGGAGATTTTCGTGTGGTGCCTGGTATGGGTGAGTTTGGGGACCGGTATTTTGGAACCGACGATGAGGATCAAGTGAGGCCTCTCCACAGTAGTTGTTCTCTCAAGTAA 1568 40.82 MRFKILGMGSASAVDLIEASSGVHFSGLLMDRKQQNGHTRSLMSETEKFHKQPFVIGVAGGAASGKTTVCDMIIHQLHDQRVVLVNQDSFYHNLTPEELTQVHEYNFDHPDAFDTEELLSSMDKLRHGEPVDIPKYDFKSYKNNVFPPRRVNPADVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTVEKARDIAAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAKTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQVTSPTGSVYSGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPSDISNRHVLLLDPILGTGNSAVQAISLLISKGVPEPNIIFLNLISAPQGLHVVCKRFPRIKIVTSEIEIGLNGDFRVVPGMGEFGDRYFGTDDEDQVRPLHSSCSLK 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 49410259 49418453 + XM_039040966.1 Bhi09g01823 44440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01823 488 Gene3D - 257 472 IPR029057 -
Bhi09g01823 488 Pfam Uracil phosphoribosyltransferase 271 472 - -
Bhi09g01823 488 TIGRFAM udk: uridine kinase 52 253 IPR000764 -
Bhi09g01823 488 CDD UMPK 55 253 IPR000764 -
Bhi09g01823 488 PANTHER URIDINE KINASE-LIKE PROTEIN 3 33 474 - -
Bhi09g01823 488 PANTHER URIDINE KINASE 33 474 - -
Bhi09g01823 488 CDD PRTases_typeI 330 445 IPR000836 -
Bhi09g01823 488 Gene3D - 49 256 IPR027417 -
Bhi09g01823 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 246 IPR027417 -
Bhi09g01823 488 Pfam Phosphoribulokinase / Uridine kinase family 55 241 IPR006083 GO:0005524|GO:0016301
Bhi09g01823 488 PRINTS Uridine kinase signature 53 70 - -
Bhi09g01823 488 PRINTS Uridine kinase signature 83 94 - -
Bhi09g01823 488 PRINTS Uridine kinase signature 128 143 - -
Bhi09g01823 488 PRINTS Uridine kinase signature 185 195 - -
Bhi09g01823 488 PRINTS Uridine kinase signature 199 210 - -
Bhi09g01823 488 PRINTS Uridine kinase signature 221 234 - -
Bhi09g01823 488 SUPERFAMILY PRTase-like 256 473 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01823 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101219714 932.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01902 Bhi-Chr1:41685313 Bhi09g01823 Bhi-Chr9:49410259 0 dispersed
Bhi03g02044 Bhi-Chr3:43998772 Bhi09g01823 Bhi-Chr9:49410259 2.24E-16 dispersed
Bhi03g02045 Bhi-Chr3:43998772 Bhi09g01823 Bhi-Chr9:49410259 3.01E-16 dispersed
Bhi09g01823 Bhi-Chr9:49410259 Bhi02g00040 Bhi-Chr2:870904 5.46E-14 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00941 . 33 188 PRT Gene Family AT1G80050 79.5 3.9e-66 248.4
Bhi11g00216 . 30 180 PRT Gene Family AT1G80050 76.2 1.2e-62 236.9
Bhi12g00418 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-61 233.4
Bhi12g00417 . 30 183 PRT Gene Family AT1G80050 73.4 5.4e-60 228.0
Bhi04g00409 . 105 254 PRT Gene Family AT1G80050 72.0 5.6e-57 218.0
Bhi11g00215 . 30 148 PRT Gene Family AT1G80050 75.6 5.3e-47 184.9
Bhi04g00941 . 1 148 PRT Gene Family AT5G11160 80.4 5.5e-63 238.0
Bhi12g00418 . 8 145 PRT Gene Family AT5G11160 74.6 4.2e-55 211.8
Bhi04g00409 . 83 220 PRT Gene Family AT5G11160 72.5 1.4e-53 206.8
Bhi12g00417 . 8 148 PRT Gene Family AT5G11160 73.0 1.8e-53 206.5
Bhi11g00216 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi11g00215 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi04g00409 . 76 256 PRT Gene Family AT1G27450 82.3 2.4e-80 295.8
Bhi12g00418 . 7 180 PRT Gene Family AT1G27450 74.1 1.9e-72 269.6
Bhi11g00216 . 1 180 PRT Gene Family AT1G27450 72.2 1.6e-71 266.5
Bhi12g00417 . 7 183 PRT Gene Family AT1G27450 72.9 7.8e-71 264.2
Bhi04g00941 . 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.6
Bhi11g00215 . 1 146 PRT Gene Family AT1G27450 74.7 2.0e-58 223.0
Bhi10g01929 . 68 557 PRT Gene Family AT2G16570 84.8 5.8e-242 834.3
Bhi10g01929 . 64 557 PRT Gene Family AT4G34740 84.4 5.2e-243 837.8
Bhi10g01929 . 28 530 PRT Gene Family AT4G38880 70.8 8.9e-200 694.1
Bhi04g00409 . 76 256 PRT Gene Family AT1G27450 82.3 2.4e-80 295.8
Bhi12g00418 . 7 180 PRT Gene Family AT1G27450 74.1 1.9e-72 269.6
Bhi11g00216 . 1 180 PRT Gene Family AT1G27450 72.2 1.6e-71 266.5
Bhi12g00417 . 7 183 PRT Gene Family AT1G27450 72.9 7.8e-71 264.2
Bhi04g00941 . 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.6
Bhi11g00215 . 1 146 PRT Gene Family AT1G27450 74.7 2.0e-58 223.0
Bhi04g00941 . 33 188 PRT Gene Family AT1G80050 79.5 3.9e-66 248.4
Bhi11g00216 . 30 180 PRT Gene Family AT1G80050 76.2 1.2e-62 236.9
Bhi12g00418 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-61 233.4
Bhi12g00417 . 30 183 PRT Gene Family AT1G80050 73.4 5.4e-60 228.0
Bhi04g00409 . 105 254 PRT Gene Family AT1G80050 72.0 5.6e-57 218.0
Bhi11g00215 . 30 148 PRT Gene Family AT1G80050 75.6 5.3e-47 184.9
Bhi11g00216 . 5 97 PRT Gene Family AT4G22570 87.1 4.7e-44 174.5
Bhi11g00215 . 5 97 PRT Gene Family AT4G22570 87.1 4.7e-44 174.5
Bhi12g00418 . 6 104 PRT Gene Family AT4G22570 82.8 8.0e-44 173.7
Bhi12g00417 . 6 107 PRT Gene Family AT4G22570 80.4 3.4e-42 168.3
Bhi04g00409 . 80 172 PRT Gene Family AT4G22570 81.7 9.2e-40 160.2
Bhi04g00941 . 11 100 PRT Gene Family AT4G22570 78.9 3.3e-37 151.8
Bhi11g00216 . 1 96 PRT Gene Family AT4G12440 84.4 7.6e-41 163.7
Bhi11g00215 . 1 96 PRT Gene Family AT4G12440 84.4 7.6e-41 163.7
Bhi12g00418 . 1 96 PRT Gene Family AT4G12440 84.4 1.3e-40 162.9
Bhi12g00417 . 1 99 PRT Gene Family AT4G12440 81.8 5.4e-39 157.5
Bhi04g00409 . 76 171 PRT Gene Family AT4G12440 79.2 7.9e-38 153.7
Bhi04g00941 . 4 99 PRT Gene Family AT4G12440 78.1 5.1e-37 151.0
Bhi04g00941 . 1 148 PRT Gene Family AT5G11160 80.4 5.5e-63 238.0
Bhi12g00418 . 8 145 PRT Gene Family AT5G11160 74.6 4.2e-55 211.8
Bhi04g00409 . 83 220 PRT Gene Family AT5G11160 72.5 1.4e-53 206.8
Bhi12g00417 . 8 148 PRT Gene Family AT5G11160 73.0 1.8e-53 206.5
Bhi11g00216 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi11g00215 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi04g01588 . 1 186 PRT Gene Family AT1G71750 64.5 6.1e-69 258.1
Bhi09g01823 . 23 475 PRT Gene Family AT1G55810 85.5 4.0e-225 778.1
Bhi01g01902 . 19 482 PRT Gene Family AT1G55810 73.5 1.7e-199 693.0
Bhi09g01823 . 72 488 PRT Gene Family AT3G27440 74.9 1.6e-183 639.8
Bhi01g01902 . 80 482 PRT Gene Family AT3G27440 75.4 1.8e-179 626.3
Bhi01g01902 . 1 482 PRT Gene Family AT3G27190 86.1 3.9e-247 851.3
Bhi09g01823 . 11 474 PRT Gene Family AT3G27190 73.9 2.6e-206 715.7
Bhi03g02043 . 3 288 PRT Gene Family AT3G53900 67.7 6.4e-107 384.8
Bhi03g02042 . 3 293 PRT Gene Family AT3G53900 66.6 4.6e-105 378.6
Bhi03g02045 . 6 228 PRT Gene Family AT3G53900 77.6 1.3e-102 370.5
Bhi03g02044 . 6 233 PRT Gene Family AT3G53900 75.9 9.0e-101 364.4
Bhi09g01823 . 8 475 PRT Gene Family AT4G26510 83.9 1.9e-230 795.8
Bhi01g01902 . 11 482 PRT Gene Family AT4G26510 75.2 1.1e-209 726.9
Bhi01g01902 . 1 482 PRT Gene Family AT5G40870 86.7 2.3e-247 852.0
Bhi09g01823 . 10 477 PRT Gene Family AT5G40870 73.0 1.7e-205 713.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61