Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01861 CAACCATATTTTCCAAAGATAGAAATCCTCAATGGCAACAGCTTCATCTTACATGGTGTTTCCTATGGTGGGTTGGAAAAACAGCAAACAAAACACAAAACCCAAACCCAAATTTCCCATCTCAGCTCAGATCAATGAAGCTGCAGAGCAACTAAATTTGGGAGACCAACAAAAAGAAGAACAGGGGAAGCCAAAACCGTCGCCGTTGCGGCCGGTCGAAGCACAGCAGAATGTGAAGAGCAAAAACATGGGGAGAGAGTATGGAGGGCAATGGCTTAGCAGTGTAACAAGACATGTAAGAATATATGCAGCTTATATTGATCCTGTTACTTGTGAGTTTGATCAAACTCAAATGGATAAACTTACTCTTATTTTGGATCCAAGTAATGAATTCCTTTGGAATCCTCAAACTTGCAACAAAGTCTATGCTTACTTCCAAGAGCTTGTGGATCATTATGAGGGAGCTCCATTGACAGAATATACACTTCGACTAATAGGTTCAGACATAGAACACTATATAAGAAAGATGCTTTATGATGGAGAAATCAAGTACAATATGAATGCAAGAGTCCTCAACTTCAGCATGGGAAAGCCAAGAATTATGTTCAATGCCAATGATCTGCCTCAGGATCTACAATCACAATAATTACTCTTTACAAATGTAATCATATGTGAAATATTCAAATCAATGTGTTGGTCTTCCAAATAATGGAAACCATAATTCTTCACCTTATACTTATCATTCCCTTCCCTGTCTCA 759 38.47 MATASSYMVFPMVGWKNSKQNTKPKPKFPISAQINEAAEQLNLGDQQKEEQGKPKPSPLRPVEAQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSNEFLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMGKPRIMFNANDLPQDLQSQ 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 51270932 51273227 - XM_039043261.1 Bhi09g01861 44478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01861 204 Pfam Cyanobacterial and plastid NDH-1 subunit M 82 190 IPR018922 GO:0016655
Bhi09g01861 204 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT M, CHLOROPLASTIC 1 200 IPR018922 GO:0016655
Bhi09g01861 204 MobiDBLite consensus disorder prediction 15 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01861 - - - csv:101206757 372.859
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g207 . . Bda01g00678 . Bpe02g00627 . . Bma01g02092 . . Cma01g01035 . Car01g00910 . . . . . . . . . . . . . . . . . . Cone4ag1436 Cone7ag1499 . . . . . . . . . . . . . . . Cmo01g01074 . . . . . . Cpe02g00856 Bhi09g01861 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012397 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 2 1 28