Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01871 TTTTTTTGAAAAAAAAGGACCAAGATAAGACCGCTGGTTTAGCCAAAAAAAAAAAAAAGAGAGAGAGAGAGAAAAAGAAAAAAGAAAAGAAAAACCTTCTTCTACTGCTCTCCCGCCTCTTGGATTTTGGAGTTTTCCATTTCAGTTGCATCTTCTTTACACCACATTTTCTTTGCTCAATTTTTCGAAGCTTGGGTGTGTGGATTCAACGGGAATTTTCAGAATCTAGTAACACATGCGACCATCGGAACCCTAATCCTATCTGGAATTTAGGGTTTTTATCTTGCCGGGCAGATGGTTATTGAAGATGGGAACAGTAATGGGGATTGCACGGGATGCGCTTTGGAGGTCAAGTTCGTGAAGAGGGAGGCAGTGGAAAACGGAATCGGAAAGGGGGTTTTGAATGTTGTTACTACAGGGGTTCCAGGAACTAGCGATGGCTTTCGAACTTACAAGAGGCGGAAGCAGATTAGATTGACTTCTGGGAGCGAATGCAAGGGAGATAGCAAGACTCATGTTGAAGCTGCTGGTCAATTAGTGACTGTCGAAGAAACTTTACAGACGCTAAGAGGCATTAACTCATGTGAGCATGTCCATTCTCCAATGGTCAATTTAGATGAGTCCCCTGAGGACCTCTGGAGATCTGTTTGGTTACAGCAGATATGCCAGTCATCAGGTGTCACTGGAGGAAATGTACCAATGTGTGTCCAGGATGGCCTTGCTTCTCATTCAGGAACCAATGACCGCTCAAGATTTAGGAAATTTGATGCTCAAGGTGCAAACAGCAATAATGACCTTGCACGTACTGGATCAGTGTCTAGCACAGTTCGGCTGGCGTCCCATAGAGAAAATGGTGATGCATCAAATGGATCGTTAGAAAATTCAAACAAATGTAGTGTGAATGAGAGTTGCCGGCGAGCTTTCCGTAGTATTATAGATTCACAGAAGTTTGTCTCATTGTGTAAGCTTCTATCTGAAAATTTCAGAGGAATCAAGGCTGATAATGTTTTTGACTTTAGTCTTGTAAACTCGAGGATCAAAGAAGGGGCTTATGAAAATTCATCTACGCTCTTCCTCTCCGACATACAACAGATATGGAGAAAGTTTCAAGCAATTGGTACTGAATTGGTATCACTGGCAGAAAGCCTCTCAGACTTTTCCAGAACTACCTATCAAGAAAAGGTGGGAGTTTCAGGGCGCAATGTATTTCAAGATGGAAAGCACGAGGACTCTACTTGGGATTCACACTCTCATGCTAAAGCAGAACATATGGATGGTTATGGAGCGTATAAAGTTTGTGCCTGCAGAAGCTGTGGAGAGAAAGCAGAAGGGATTGATTGTCTGGTTTGTGACTCATGCGAGGAAATTTACCATATTTCCTGCATCAAACCTCCCGTCAAAGAGATTCCCCTTAAGAGTTGGTACTGTGCTAATTGCATTGCAAGTGGATTTAGTTTGCGTCATGACAACTGTGTAGTGTGTGAGAGGTTGAATATACCCACGACGCTAGCCAATGGAGTTGATGTTATTCTGGAAACAAGTGAACACAATCATGGGGATGAGAATCCGAACTATTGTATGGAGGATGGTACTGAACAGCTGAAGGAAGGCAAAGATTTGGGTCCTTGCAAAATTTGTGGAAATGGAGTAGTAGAAGGTGATGATAAATATAGAATATGCAGCCACCTGTTCTGCCCTCATAAATACTATCACATCAGGTGCTTGACTATGAAGCAGTTAAAATCTTACGATACATGCTGGTATTGCCCTTCTTGTCTTTGCAGAGCATGCCTCATAAATCAAGACGATGACAAGATTGTTCTATGTGATGGCTGTGATCATGGATTCCACATTTATTGTATGAGACCCCCACTTGCTGCAATTCCTAAAGGAAAATGGTTTTGTAGCAAATGTGCAGCTGGAATCCAGGCAATACGCAGCGTGAAAATGGCATATGAGAATTTTGAAAACAAGCAAAGTAAGAGAGGTAAAGATACATTTGGGGTTTATGGAAATTCGGGCAAGGAACGGATAAATGGAGGTGATGAGGAATCGGATACAGGAAGGGGAGGAATGGATATGCTTCTTACTGCAGCCAAGACTCTAAATTATGAAGAGGGTCTGGCTAACCTTTGATATAAATATTTGATTCGACAGATGGTCTGAAGCTCTAAAATTCCATGCGACTGATTACACATTTTAATTCTCATAGAATTTTGTTTCATTATGTTTTCATGGACGTAAATTTCATTAGGTTTTGGACACTTAGATATGCTGACTTTTCGAAAATTGTTACGTGGAATGATGTCTGTAGGCTGTGTAAAAGAAACTTGGCACATCTTAAAATGAAGAGACTGAGAAACCAGGATGCTGTTTGAAAAAAAGGAGAACCAGGTGAGAATCAACCTTGTATTGTTTTACTCATTTTGTACCATGAAGTATATAATCTTCGGGGATCATGAGAATGTCGATGTTTCGACTCTGTTGTAAAATCCATTTAACACAATGACAATCAAAGGAAATGATGCCTTTTTGTATGTA 2541 40.93 MVIEDGNSNGDCTGCALEVKFVKREAVENGIGKGVLNVVTTGVPGTSDGFRTYKRRKQIRLTSGSECKGDSKTHVEAAGQLVTVEETLQTLRGINSCEHVHSPMVNLDESPEDLWRSVWLQQICQSSGVTGGNVPMCVQDGLASHSGTNDRSRFRKFDAQGANSNNDLARTGSVSSTVRLASHRENGDASNGSLENSNKCSVNESCRRAFRSIIDSQKFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTELVSLAESLSDFSRTTYQEKVGVSGRNVFQDGKHEDSTWDSHSHAKAEHMDGYGAYKVCACRSCGEKAEGIDCLVCDSCEEIYHISCIKPPVKEIPLKSWYCANCIASGFSLRHDNCVVCERLNIPTTLANGVDVILETSEHNHGDENPNYCMEDGTEQLKEGKDLGPCKICGNGVVEGDDKYRICSHLFCPHKYYHIRCLTMKQLKSYDTCWYCPSCLCRACLINQDDDKIVLCDGCDHGFHIYCMRPPLAAIPKGKWFCSKCAAGIQAIRSVKMAYENFENKQSKRGKDTFGVYGNSGKERINGGDEESDTGRGGMDMLLTAAKTLNYEEGLANL 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 51736452 51756176 + XM_039041930.1 Bhi09g01871 44488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01871 613 SMART PHD_3 336 382 IPR001965 -
Bhi09g01871 613 SMART PHD_3 498 541 IPR001965 -
Bhi09g01871 613 SMART PHD_3 444 495 IPR001965 -
Bhi09g01871 613 Pfam PHD-finger 496 541 IPR019787 -
Bhi09g01871 613 Pfam PHD-finger 337 382 IPR019787 -
Bhi09g01871 613 Gene3D - 243 384 - -
Bhi09g01871 613 SUPERFAMILY FYVE/PHD zinc finger 330 382 IPR011011 -
Bhi09g01871 613 MobiDBLite consensus disorder prediction 568 592 - -
Bhi09g01871 613 SMART ring_2 496 540 IPR001841 -
Bhi09g01871 613 SMART ring_2 445 494 IPR001841 -
Bhi09g01871 613 PANTHER HISTONE ACETYLTRANSFERASE 175 608 - -
Bhi09g01871 613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 547 IPR013083 -
Bhi09g01871 613 PANTHER D4, ISOFORM A 175 608 - -
Bhi09g01871 613 ProSiteProfiles Zinc finger PHD-type profile. 334 384 IPR019787 -
Bhi09g01871 613 ProSiteProfiles Zinc finger PHD-type profile. 493 543 IPR019787 -
Bhi09g01871 613 SUPERFAMILY FYVE/PHD zinc finger 496 545 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01871 - - - csv:101205573 1075.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00654 Bhi-Chr9:14091973 Bhi09g01871 Bhi-Chr9:51736452 2.01E-07 dispersed
Bhi09g01871 Bhi-Chr9:51736452 Bhi11g01662 Bhi-Chr11:47833461 2.87E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g202 Blo01g01312 . Bda01g00681 . Bpe02g00624 . . Bma01g02095 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1438 . . Cone20ag0418 . . . . . . . . . . . . . . . . . . . . Cpe02g00868 Bhi09g01871 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007161 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1921 PF00628 PHD 1.70E-12 CL0390 Bhi TR