Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g01946 AGCCCATACCCAAAATAATAACTACGCGTTTGGATGACGTATTTCTCCCACTCGATCCCAATATGGCCGATCATCTGCCAGCAATACTCCAAAATCCCTAATCTTCTCCAAATTTTATCGTCCCCTTAAAATTCATCTCCTTCAGTCGCACGACCCCTAACCCTAACTTTGGTTCTGTAATTCCTCTACAATCATCATTCCCGTGTTTCTTCCAATTTTTCTGGCCGGAAATTTTGAATTTTTCCGGCGATCCCACGTTTTTTTTTTCAATAATTGTTTGAGAAATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTACCAGATGCGAATTTCCCGGTCACGAGTTCAAGCTTCTCCTGGTCTATTCAGCCCTTTAACGGCACTCCTGATCCCGGTGTGGAAATTGATGGATCGTTGGCAGATCTTGATGGTCGTCTAGAATCTGGCTCAAAGAAGAGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCTTGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGAACTCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAAGCTGCAATTTTAGTTGATGCGGTTCGAATGGTGAATCAGTTGCGTAGCGAAACCCAGAAACTAAAAGAATCGAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAATGAGCTTCGCGACGAGAAGCAGCGGCTCAAGGCAGATAAGGAGAGGCTAGAACAGCAAGTCAAGTCGATGCCTGCTCAACAACCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGTGTCAAGCTCCTGGCAGTAAGTTAGTTCCTTTCATTGGTTACCACCCAAGTGTTGCCATGTGGCAGTTCATGCCACCTGCTGCGGTGGACACGTCACAGGATCACATACTCCGGCCACCCGTCGCTTAACTTGGTAGCAACCAAGGTTGCCATGAAGAAACCATTGGCAGCATCTGATTGGTTGGGATTTTGCCCCGGACCTTCATGTTTATTCTGCCATTGTAGACTAATGTATTAGTATTTTTAGTTAGTAGGTTCGCTTGTCAATTGATTTTGGGGCGGTCTATGTTATTTGTCATTGGATACTTGAAAGAACCTTACTGTTTTAAGTTTTGTAATTGTAAATGTGAATAAGCGAGTGATTTGGTAA 1233 44.44 MVSPENPNWLFDYGLIDDIPVPDANFPVTSSSFSWSIQPFNGTPDPGVEIDGSLADLDGRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELNSILDPGRPPKTDKAAILVDAVRMVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFAAQCQAPGSKLVPFIGYHPSVAMWQFMPPAAVDTSQDHILRPPVA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 54313939 54316924 - XM_039044334.1 Bhi09g01946 44563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g01946 235 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Bhi09g01946 235 Gene3D - 66 124 IPR036638 GO:0046983
Bhi09g01946 235 CDD bHLH_AtILR3_like 83 155 - -
Bhi09g01946 235 Coils Coil 123 178 - -
Bhi09g01946 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983
Bhi09g01946 235 CDD bZIP 141 173 - -
Bhi09g01946 235 SMART finulus 81 132 IPR011598 GO:0046983
Bhi09g01946 235 PANTHER TRANSCRIPTION FACTOR ILR3 1 235 - -
Bhi09g01946 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Bhi09g01946 235 PANTHER BHLH TRANSCRIPTION FACTOR 1 235 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bhi09g01946 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g01946 Bhi-Chr9:54313939 Bhi11g00654 Bhi-Chr11:15317417 2.59E-121 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1922 PF00010 HLH 8.40E-10 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g01946 - - csv:101215402 433.721