Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02001 GCTCAAATTTCCTGCAATAAAAAATCAAAATAAATTTCCTTTTTCTTAAATTCGTTTTCGCCTAAAAACCCTAATTTCTTCTTTCTTCTCCGTTAATTCTTGGCCTTAAACCCATGCAGGTGAATGCCCTAATTGTATTCGTCGATTCCATTTGAGACTTAGCCCTTCAGATTGGCGAATTTTGACTCTTCCATTTCCTCCTCAACTCTATCAAGATACGTTCTCTTCCTTCTATTTTTTTTTTTTCATTTTTTTCTTAATTCCATTCTTTACGTCAGGGGCTGTGATTTTCTTTCGTCTGTCTCATCAAATGTTCTAGTGGATTACGAGCAGTATTTTTGAGAAATTCCAACGACGGAAGTGGATTTTTCATTTGTTTTTTAAAATTTTATTGGGGGGTTGCGTTGAATTCTTAAATACTCGAGCAGCGGCGGCAGTTTTATTTTTGAATTTCAGAGTCGGCAGATTGGTTGAGATTTACCCAAGTATGTAAGGAGTATTGAGCGAGATGGATTTTCTCCTTTTGCTGTGATTTTGAAGGTTTGATGTTTAGACGGATTGAATTTATTTAGGAACGTGTTTGTAGAATGATGGATAGAACCCCTGGTTTAGTTTTGAAGCGTTCCTTGCGAAAGAAAGCTACTTCGCGAAATTATGACGAGGATTTAATGGATGAGTTTGTAGAGAAGCATTTAGGGGGTGTTTCGAAGAAGAAGAAGAAGAAGAGCAAAACGGCAGAGGATCTAGAGAAAGAGACTGAAATTGAGGCTATGATAGCGTTATCGGTTGGATTCCCAATTGATGCCTTGCTTGAGGAGGAGATTAAAGCAGGGGTGGTGAAGAAATTGGGTGGGAAAGAGCAGAATGATTACATTGTTGTTAGAAATCATATCCTCGCGAGGTGGCGGGGCAATGTACGAATGTGGCTTTCAAAGGGGCAGATTAAAGAAACTGTGAGCAATGAGTATGAACATTTAATTAGTGCAGCATATGATTTCCTTCTGTACAATGGCTATATAAACTTTGGTGTGTCACCAACCTTTACATCTCAAGTGTCAGAGGAGGGATCTGAAGGAACTGTGATTGTTATTGGTGCAGGCCTTGCCGGATTAGCTGCAGCACGGCAGCTATTATCATTTGGTTTTAAGGTTATTGTTTTAGAAGGTAGGAATCGTCCTGGTGGAAGAGTTTATACACAAAAGATGGGGCAGGAGGGCAAATTTGCTGCTGTAGATCTTGGTGGCAGTGTCATTACTGGTATCCATGCTAATCCTCTTGGAGTTCTAGCTAGACAACTTTCCATTCCGCTTCATAAGGTTAGAGATAATTGTCCATTGTATAAACCTGATGGGACACTGATTGGAAAGGATATTGATGCCAAGATTGAGTTTATTTTTAATAAATTGCTAGACAAAGTGACTGAACTGAGAAAGATTATGGGAGGATTGGCAAATAACATATCTCTTGGAACCGTTCTAGAAAAACTCAGGCAATTGTATGCTGTGGCTCGGAGTACGGATGAAAGACAACTTCTCGATTGGCATATAGCAAACTTGGAATACGCAAATGCAGGATGTGTTTCAAATTTGTCTGCTGTGCATTGGGATCAAGACGATCCTTATGAAATGGGTGGCGACCATTGCTTCCTAGCAGGAGGTAATTGGAGATTGATAAAAGCATTATGTGAAGGAGTTCCAATATTTTATGGGCAGGTTGTTGACACTATTAAATATGGAAGTGAAGGAGTGGAAGTAATAGCTGGAGATCAAGTGTTTCAAGCGGATATGGTCCTGTGCACGGTCCCACTTGGGGTTCTGAAGCGAAAACGTATCAGATTTGAACCAGAGTTACCTAAAAGGAAGCTGGCAGCAATTGAGCGACTGGGTTTTGGATTATTGAATAAAGTCGCAATGGCTTTTCCTCATGTTTTCTGGGGGGAAGACATAGATACATTTGGATGTCTTAGAGAGCATTGCCATCAGCGAGGGGAGTTCTTTTTGTTTTATGGTTATCATACTGTTTCTGGAGGTGCAGTTCTTATAGCTCTAGTTGCTGGAGAAGCTGCTGAAGCGTTTGAATCCACGGATCCAACCGTGTTGCTCCACCGGGTTCTTGGAATTCTCAGAGGCATATTCAGCACCAAGGGTATTGACGTGCCAAATCCAATACAGACAATATGCACAAGATGGGGGAGGGATCCATTTTCTTACGGCTCATACTCTCATGTTCGAGTGGGGTCCACTGGCAACGATTACGACATTCTTGCAGAAAGTGTGTGGAACAGATTATTCTTTGCCGGTGAGGCCACAACTAAGCAATATCCAGCCACCATGCATGGTGCCTTCTTGAGTGGCCTAAGAGAAGCTTCATGTATTTACCAAGCAACTCGGGGACGATCAAACAATACTAGGAAGTTCATGTCGAAAAGTCTCAGACATGATATTTTGGCAGATCTTTTTAGGAAACCTGACATTGAAGTTGGAAATCTGTCCTTTATTTTCAATTCCTTGGTAGATGATGAAAAATCTATGGGGGTCATGAAAATCACATTCAGAGGCAAGGGAGAAAGTTCTAATGACGAAGAATTGGCAGACGATTGTGAAGACCCCTCACAACAACAGCTGCTGCTTTACACGATTGTATCCCGTGAACAGGCACGTGAGCTAAAACTTGCAACTGGAGAGAATGAAGTATTGCCAGTGCTCGAAGAGGCCGGGGGAGGAATCGGTTGTCTGCTGGACAACCACAACTTCAACCCCAATCACAACCACAAATGCAAGCCCAGCCCCAGCCCCAACCACAACCCCAGCCCCAGCCACAATCACGACTGCAATCCCAGCTGCAATATCAACCTGAGCCCCAGCCGCAATATCAACCCGAGCCCGAGCCCCAACCCCAACTACAAATACAACCCCAGCCCCAACTGCAACTGCTTCCTCAGCCACAGCTTCAACCCCAACTGCTACTCCAACCTCAATCACAACTACAGCTACAACCACAACCACAAATCTAATAGATAATCTTCTGCTGCTGTGGACTTAAGAACCAACCCTCTTTTGGAAATAGAAGAAGTACCTGGAAACATGTGGGTGCATTATATTGCTTGAAAAGGGCTGTCACAAATAGGCATGCCTGTCAAATCCCAGATGAAGATTTGAATTATGTCCCAAGGGATGATGAATTTGGTTATTTCATTGTTTCACAATTCAGAAAAAGTGCGATTTTTTTTCAGCCTCAGCATGGATAATCGAAGTCTGAAGCAAACTGACTTGGTGTGGGTAAAAGTAATAACATCATCAGCTGATCAATGTGAAAACCTTTTGAGTAGATCAAATGACTGTAATTAATCAATTTGGTGTCTACTAGGGTAACAGGAGTTACAATTCTTCCCCGTATTTTTTTTTGTAGTTCAATACAACTCTATGTTAACTCATTGACTCCAAAGAAAGCAGTTGTATTCTTGGGCATCCATAGTTTTACAACACATTTCGTATCTGTATTATACACTCAATTTTTTCCTGGAAAATCCCAACCTAGAAAGCCTTTTCGCC 3551 41.73 MMDRTPGLVLKRSLRKKATSRNYDEDLMDEFVEKHLGGVSKKKKKKSKTAEDLEKETEIEAMIALSVGFPIDALLEEEIKAGVVKKLGGKEQNDYIVVRNHILARWRGNVRMWLSKGQIKETVSNEYEHLISAAYDFLLYNGYINFGVSPTFTSQVSEEGSEGTVIVIGAGLAGLAAARQLLSFGFKVIVLEGRNRPGGRVYTQKMGQEGKFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGTLIGKDIDAKIEFIFNKLLDKVTELRKIMGGLANNISLGTVLEKLRQLYAVARSTDERQLLDWHIANLEYANAGCVSNLSAVHWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYGQVVDTIKYGSEGVEVIAGDQVFQADMVLCTVPLGVLKRKRIRFEPELPKRKLAAIERLGFGLLNKVAMAFPHVFWGEDIDTFGCLREHCHQRGEFFLFYGYHTVSGGAVLIALVAGEAAEAFESTDPTVLLHRVLGILRGIFSTKGIDVPNPIQTICTRWGRDPFSYGSYSHVRVGSTGNDYDILAESVWNRLFFAGEATTKQYPATMHGAFLSGLREASCIYQATRGRSNNTRKFMSKSLRHDILADLFRKPDIEVGNLSFIFNSLVDDEKSMGVMKITFRGKGESSNDEELADDCEDPSQQQLLLYTIVSREQARELKLATGENEVLPVLEEAGGGIGCLLDNHNFNPNHNHKCKPSPSPNHNPSPSHNHDCNPSCNINLSPSRNINPSPSPNPNYKYNPSPNCNCFLSHSFNPNCYSNLNHNYSYNHNHKSNR 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 55874862 55878591 - XM_039042262.1 Bhi09g02001 44618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02001 810 Gene3D - 247 552 - -
Bhi09g02001 810 SUPERFAMILY FAD/NAD(P)-binding domain 164 599 IPR036188 -
Bhi09g02001 810 Pfam SWIRM domain 74 146 IPR007526 GO:0005515
Bhi09g02001 810 Pfam Flavin containing amine oxidoreductase 172 596 IPR002937 GO:0016491
Bhi09g02001 810 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 39 701 - -
Bhi09g02001 810 MobiDBLite consensus disorder prediction 727 750 - -
Bhi09g02001 810 SUPERFAMILY FAD-linked reductases, C-terminal domain 433 545 - -
Bhi09g02001 810 Gene3D - 165 594 IPR036188 -
Bhi09g02001 810 SUPERFAMILY Homeodomain-like 56 155 IPR009057 -
Bhi09g02001 810 Gene3D - 60 158 IPR036388 -
Bhi09g02001 810 PANTHER FLAVIN MONOAMINE OXIDASE 39 701 - -
Bhi09g02001 810 ProSiteProfiles SWIRM domain profile. 54 155 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02001 - - - csv:101217308 1318.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01645 Bhi-Chr6:47069991 Bhi09g02001 Bhi-Chr9:55874862 3.98E-24 dispersed
Bhi09g02001 Bhi-Chr9:55874862 Bhi09g03655 Bhi-Chr9:91158006 5.19E-48 dispersed
Bhi09g02001 Bhi-Chr9:55874862 Bhi09g02002 Bhi-Chr9:55874862 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g282 . Blo03g01530 . Bda09g00486 . . . . . . . . Car01g01002 . . Cpe06g00714 Cpe02g00722 Bhi09g02001 . . . Hepe01g1358 Mch11g1108 . Cla11g01798 Cam11g1864 Cec11g1888 Cco11g1894 Clacu11g2027 Cmu11g1833 Cre11g2239 . Cone9ag0142 . . Lsi04g01286 . . . . . . . . . Bma07g01198 Bma14g00189 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004494 2 2 2 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1926 PF01593 Amino_oxidase 4.60E-91 CL0063 Bhi TR