Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02023 TCATCTTCATCCCTTCCAAACAGTCCTTGGTCTATCCAAGGTGGCGGCAATCTTTTAGTAAATAAATAAAACAAATAAACGAAAAATGAAGGGTTTAGGCTGCTGTTTGTTCATCTCTGTTCTTCTCCTCCTCTCTTCTCTTTCATTTTTGTCTTCGGCCCTTTCCGATGCCGAAGCTTCTTTCATTGCCGGCCGCCAACTTCTAACCCTTCATGAGAATCATGATTTGCCTGATGATTACGAGTCGAAAGTTGAGGTCAATGAAACCTTTTCCAGCCCCAGGCTCCGGCGGGCCTACATTGCCCTTCAAGCCTGGAAGCTCGCTATTTATTCAGACCCTTTAAACACCACCGCCAATTGGGTAGGCCCCGATGTCTGCTCCTACACCGGAGTTTTCTGCGCCCCTGCTCTCGACGACCCCAAACTCGAAGTTGTCGCCGGAATCGACCTCAACGAAGGCGATATCGCCGGTTACCTCCCCGTGGAGCTCGGTTTGCTGACTGACATTGCTCTGTTCCACATCAACAGCAACCGATTCTGCGGCATTGTCCCGTTTAGCTTCTCCAAGCTTACTCTGCTCTACGAGCTGGACATTAGTAACAACAGATTTGTAGGCCATTTCCCTGAAGTGGTTGTGAGGATTCCTAATTTGAAATATCTGGACATCAGATACAATGATTTCGAAGGTGAATTGCCTTCTGAGCTTTTCACTAAGGAACTGGATGCGATTTTCCTCAACAACAACAGATTCACCTCCTTCATTCCTGAGAGTTTTGGGGACTCGCCGGCATCGGTTATTGTAATTGCCAACAACAATTTCACGGGATGTATTCCGAGCAGCATTGGCAAAATGGGGAATACATTGAAGCAGCTTATAATGTTGAATAATGGACTTGTTGGTTGTTTGCCTAGTGAAATTGGGATGCTTGGAAATGCTACGGTTTTGGATGTTTCGTCAAACCAGTTGAGTGGAATCTTGCCGAAGAGCTTCGATGGGTTGAAGAATGTGGAGATTATGGATATTTCTTCGAATTTGTTGACTGGCGTTGTGCAGGAGGGTTTGTGCAATTTGCCTAAATTGGTTAATTTGACATTCTCTTACAATTTCTTCAATGGCGAGGCGGATAGGTGTGTGCCGCAGAATAGAAAGGATGTTTTGTTGGATGATGGTAACAATTGCTTGCCGGAAAGACCCAAGCAGAAGGCGGCAGAGACTTGTACCCCCTCCCGAGGCACCAACACCTTCCCCTGTTGACGATTCTCACGAGCAATCACCAGTCCCAAGATACCGCCCCTTCCTCCACCTGTAGTGCACTCTCCTCCACCACCGGTGCACTCTCCTCCACCACGGTGCACTCTCCTCCACCACGGTTCACTTTCACCACCACCGGTTTCATCACCCCCACCACCACCAGTTCACTCTCCACCACCACCAGTTCACTCTCCACCACCACCGGTTTCATCACCCCCACCACCACCAGTTCACTCTCCACCACCACCAGTTCACTCTCCACCACCACCGGTTTCATCACCCCACCACCGGTTCATCCCCCCACCACCACCAGTTCACTCTCCACCACCACCAGTTCAGCTCTCACCACCACCAGTTCACTCTCCACCACCACCGGTTTCATCACCCCCACCACCACCAGTTCACTCTCCACCCACCACCGGTTTCATCACCCCACCACCGGTTCACTCTCCCCCACCCCCAGTTCACTCTCCCCACCACCGGTCTCCTCGCCCCACACGGTCTTCCCCACCACCACCAGTTTACTCTCCACCACCACCACCGCCGGTGCACTCACCCCCACCACCAGTCCATTCACCACCACCACCGGTGCACTCACCCCCACCACCAGTCCATTCACCACCGCCTCCAGTCCAATCTCCTCCACCTCCGGTATTCTCTCCACCACCACCTTCCCCATCTCCATCTCCTCCTCCTCCGGTCGCATCTCCGCCGCCCCCACTAGAAGACATCATCCTGCCACCAAACTTGGGTTTCCAGTACTCATCACCACCTCCACCAATGTTTCCGGGATACTAAGCAGCAAATCATCGAACTCTCATCTCTATTTTAACATTTTTCATTTTTATTATGGGTAAACCATACTTTTGGTCTCGAGTTTAAAGTAAAGTTTCTATTTGGACCTAAAATTTGAGATTTAGTGAATAGTTCTAAAAATGATCATCGCGTGAAGTTGATAGTTGACTAATTGAAAAAATGAATAATTGAGGTTTCAATTCTTAAATCATCTTTCTCCACTTCATAAAAGGGAAGGGAAGGGAAAACAAAGAAGAGAGAGAAGGAGAAGAGAGAAAAGAAAAAAAAACATAAAATTAATAAAATATGTCATGATTTAAAAATTGACACCTCAATTATGTCTCATTTTTCTATATAAATCAACTTCACTCCAACCATTCAAAACGTATTTCTAAATTTTGAGGATCAAATACAAATTTATAATTTAATCTAGAGACCAAAAGTGTATTTTTAGCTTCATTACTATCCTATGTACCCTTGATGATGACAAATTGTAATGATCCCCTTCTTTGTGCAATATC 2568 47.16 MKGLGCCLFISVLLLLSSLSFLSSALSDAEASFIAGRQLLTLHENHDLPDDYESKVEVNETFSSPRLRRAYIALQAWKLAIYSDPLNTTANWVGPDVCSYTGVFCAPALDDPKLEVVAGIDLNEGDIAGYLPVELGLLTDIALFHINSNRFCGIVPFSFSKLTLLYELDISNNRFVGHFPEVVVRIPNLKYLDIRYNDFEGELPSELFTKELDAIFLNNNRFTSFIPESFGDSPASVIVIANNNFTGCIPSSIGKMGNTLKQLIMLNNGLVGCLPSEIGMLGNATVLDVSSNQLSGILPKSFDGLKNVEIMDISSNLLTGVVQEGLCNLPKLVNLTFSYNFFNGEADRCVPQNRKDVLLDDGNNCLPERPKQKAAETCTPSRGTNTFPCXRFSRAITSPKIPPLPPPVVHSPPPPVHSPPPRCTLLHHGSLSPPPVSSPPPPPVHSPPPPVHSPPPPVSSPPPPPVHSPPPPVHSPPPPVSSPHHRFIPPPPPVHSPPPPVQLSPPPVHSPPPPVSSPPPPPVHSPPTTGFITPPPVHSPPPPVHSPHHRSPRPTRSSPPPPVYSPPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPVFSPPPPSPSPSPPPPVASPPPPLEDIILPPNLGFQYSSPPPPMFPGY 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 56817622 56820331 - XM_039043568.1 Bhi09g02023 44640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02023 654 Pfam Leucine rich repeat 285 340 IPR001611 GO:0005515
Bhi09g02023 654 MobiDBLite consensus disorder prediction 398 654 - -
Bhi09g02023 654 SUPERFAMILY L domain-like 80 366 - -
Bhi09g02023 654 MobiDBLite consensus disorder prediction 433 634 - -
Bhi09g02023 654 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 5 528 - -
Bhi09g02023 654 Pfam Leucine Rich Repeat 188 206 IPR001611 GO:0005515
Bhi09g02023 654 MobiDBLite consensus disorder prediction 399 421 - -
Bhi09g02023 654 PRINTS Proline rich extensin signature 403 424 - -
Bhi09g02023 654 PRINTS Proline rich extensin signature 439 456 - -
Bhi09g02023 654 PRINTS Proline rich extensin signature 458 483 - -
Bhi09g02023 654 Gene3D Ribonuclease Inhibitor 71 366 IPR032675 -
Bhi09g02023 654 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 5 528 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02023 - - - cmos:111442932 593.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01943 Bhi-Chr2:52448638 Bhi09g02023 Bhi-Chr9:56817622 5.85E-100 dispersed
Bhi05g01965 Bhi-Chr5:60717593 Bhi09g02023 Bhi-Chr9:56817622 1.83E-131 dispersed
Bhi06g02041 Bhi-Chr6:55954992 Bhi09g02023 Bhi-Chr9:56817622 1.53E-128 dispersed
Bhi09g02023 Bhi-Chr9:56817622 Bhi12g01876 Bhi-Chr12:60171470 6.02E-162 dispersed
Bhi09g02023 Bhi-Chr9:56817622 Bhi02g01114 Bhi-Chr2:25237934 6.20E-136 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi01g00768 . 42 369 Leucine-rich Repeat extension Gene Families AT1G62440 62.7 1.6e-48 192.2
Bhi02g01114 CCT 53 263 Leucine-rich Repeat extension Gene Families AT1G62440 60.8 1.4e-44 179.1
Bhi05g01965 . 43 372 Leucine-rich Repeat extension Gene Families AT1G62440 58.8 1.2e-43 176.0
Bhi06g02041 CCT 72 241 Leucine-rich Repeat extension Gene Families AT1G62440 70.0 5.0e-42 170.6
Bhi09g02023 . 47 293 Leucine-rich Repeat extension Gene Families AT1G62440 57.9 1.4e-39 162.5
Bhi12g01876 . 44 225 Leucine-rich Repeat extension Gene Families AT1G62440 50.5 8.3e-37 153.3
Bhi02g01114 CCT 26 397 Leucine-rich Repeat extension Gene Families AT4G13340 78.0 2.0e-72 271.6
Bhi06g02041 CCT 41 424 Leucine-rich Repeat extension Gene Families AT4G13340 73.2 7.7e-64 243.0
Bhi01g00768 . 42 367 Leucine-rich Repeat extension Gene Families AT4G13340 71.3 1.6e-53 208.8
Bhi05g01965 . 43 373 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 3.4e-43 174.5
Bhi09g02023 . 18 233 Leucine-rich Repeat extension Gene Families AT4G13340 66.2 4.9e-42 170.6
Bhi12g01876 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 57.3 7.8e-40 163.3
Bhi02g01114 CCT 28 400 Leucine-rich Repeat extension Gene Families AT3G24480 75.9 1.5e-76 284.6
Bhi06g02041 CCT 37 426 Leucine-rich Repeat extension Gene Families AT3G24480 70.8 3.0e-69 260.4
Bhi01g00768 . 36 367 Leucine-rich Repeat extension Gene Families AT3G24480 66.7 6.8e-53 206.1
Bhi05g01965 . 43 373 Leucine-rich Repeat extension Gene Families AT3G24480 60.5 8.9e-45 179.1
Bhi09g02023 . 18 233 Leucine-rich Repeat extension Gene Families AT3G24480 63.3 1.9e-42 171.4
Bhi12g01876 . 32 406 Leucine-rich Repeat extension Gene Families AT3G24480 50.4 8.6e-40 162.5
Bhi01g00768 . 15 368 Leucine-rich Repeat extension Gene Families AT3G22800 71.3 2.9e-69 260.4
Bhi05g01965 . 40 372 Leucine-rich Repeat extension Gene Families AT3G22800 64.4 2.3e-50 197.6
Bhi02g01114 CCT 65 389 Leucine-rich Repeat extension Gene Families AT3G22800 63.3 3.7e-40 163.7
Bhi02g01114 CCT 39 397 Leucine-rich Repeat extension Gene Families AT5G25550 59.3 2.9e-39 160.6
Bhi06g02041 CCT 58 238 Leucine-rich Repeat extension Gene Families AT5G25550 71.8 1.2e-37 155.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92