Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02029 TCCCACCTTTCCCTTCTCTCACAAACCCCCATATTATTTCCTCTTCCTTCCCCCTTTGGATAACAATTCTCATTCTCTTTTCTTTTTCTTCTCAAATATGTAAGGTGGAGATGAAACCTCGAACCTCGAGATTGAAATTACACGTTTATGTTACACGAGCTATGCTCGTGTTTGACAACTCTCAGTTTTTATGATATATACATCTCTTCAGCATTAAATAAACTCAAACCTCTCTAGCTCATACCTTTTCCTTAACTTTTTCCTTCCCCATTTCCCTCTTTTTCTTACTTCCCATTTCTTCTTCTCTATATTTTACTAATAATAATTATAATGATTTTTTCTCCTACTTCTGACTTCTCTTCTTCAAATCATAACCCACTCATTATGCAATCACTCATTTCCCTTTTCTTCTAGCCCTCCAATTATAACTCAATTACTCCTCTTTTTTCTTTTTTAATCTCTTCTTTTAGATCTTTGTGATGAACACACCATCTTCCTTGCCGGACCTCTCCTTGCAGATCAGCCTTCCGATGTCGACGCTGCCGTGTGAGATGAAGGCCAAGTCAAGAAGCTCAACCACCACGGATTCGAGTTCTAGTGGCAAAAGTGATTTGAGCCATGAAAATGGTCTCTTCCGCTTAGGGTTTGAAGTGGGAGATATGGATGTTTCTCATCATCGTCCTCGTCCTCGTCCTCATCAAGCTTGTTATAATGTCCGTGGTCGCCGTGACTTCAAAAGAAGCGGTGGCGGGGTCGGGTGTGGAGTAAGAAGAAGCAATATCCGAGCTCCAAGAATGAGATGGACTACAACTCTTCATGCTCATTTTGTACATGCCGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCACGTCAAAAGCCATTTGCAGATGTACAGAACAGTGAAAAATACTGTGAAGGGAACAGATGATTGTGGAAGGGGTGAGGTTGAAGATGATGCCATGGATTTATCTTGCTCTGCTAAAAAATCTATGTTTGAATCAGCTCATTTGCAGAGAATCCAAAGAAGTAGTTTGGTAACGTCAATGCACAAGAGTTGCGACAGGGCCAGGTCAAACGCCGACGTTTTCGCTAAATCCAGAGGAATGAAGGTTGAAGGAAGCAATGGAGATGATGACGAGGCAATCACCATGCAGCGGATTAATTTAGAGTTTACTCTTGGAAGACCAAGTTGGCAATTAGATTATGGTGATGCAAAAGAGCTTGCCCTTCTCAATTGCTAATTTTCTAAATTTCCAACCCAAAGAAACGAGAGAGAAAAATCTCCGAGTTTAGTCTATTTTATTATTGCATTAAAAAATATCAACAAGAATGAATATCTTGATATTTTGTCAACGATTTTGTGTTTTAGTTAAAGATGGAAAAATAAATAAAATAGAGTTATATTATAGCACGTTATGTACATAA 1476 39.3 MNTPSSLPDLSLQISLPMSTLPCEMKAKSRSSTTTDSSSSGKSDLSHENGLFRLGFEVGDMDVSHHRPRPRPHQACYNVRGRRDFKRSGGGVGCGVRRSNIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTDDCGRGEVEDDAMDLSCSAKKSMFESAHLQRIQRSSLVTSMHKSCDRARSNADVFAKSRGMKVEGSNGDDDEAITMQRINLEFTLGRPSWQLDYGDAKELALLNC 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 56951989 56957054 + XM_039040601.1 Bhi09g02029 44646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02029 270 MobiDBLite consensus disorder prediction 23 46 - -
Bhi09g02029 270 Pfam Myb-like DNA-binding domain 105 156 IPR001005 -
Bhi09g02029 270 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 5 262 - -
Bhi09g02029 270 Gene3D - 103 160 - -
Bhi09g02029 270 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 262 IPR044847 GO:0000976|GO:0006355|GO:0010158
Bhi09g02029 270 MobiDBLite consensus disorder prediction 25 46 - -
Bhi09g02029 270 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 104 157 IPR006447 GO:0003677
Bhi09g02029 270 SUPERFAMILY Homeodomain-like 101 158 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02029 - - - bhj:120084780 521.161
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi04g00296 Bhi09g02029 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00296 Bhi-Chr4:6912209 Bhi09g02029 Bhi-Chr9:56951989 8.81E-44 dispersed
Bhi08g01323 Bhi-Chr8:40259997 Bhi09g02029 Bhi-Chr9:56951989 7.94E-34 dispersed
Bhi09g02029 Bhi-Chr9:56951989 Bhi12g01229 Bhi-Chr12:36477247 1.22E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi09g02029 CCT 1 177 G2-like Transcription Factor Family AT5G42630 60.4 9.3e-42 167.9
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT1G25550 54.3 7.2e-52 201.8
Bhi07g01367 . 19 257 G2-like Transcription Factor Family AT1G25550 55.4 4.7e-51 199.1
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT3G25790 51.4 1.7e-42 170.6
Bhi08g00576 CCT 1 245 G2-like Transcription Factor Family AT3G46640 52.8 1.6e-58 224.2
Bhi11g02825 . 5 185 G2-like Transcription Factor Family AT3G46640 51.3 7.7e-37 152.1
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT5G05090 56.7 2.6e-75 279.6
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT5G05090 53.0 1.2e-67 254.2
Bhi01g00234 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.6e-65 246.1
Bhi01g00235 . 12 310 G2-like Transcription Factor Family AT4G13640 54.9 2.3e-56 216.9
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi06g00890 . 1 229 G2-like Transcription Factor Family AT1G69580 55.9 1.8e-49 194.1
Bhi06g00889 . 1 223 G2-like Transcription Factor Family AT1G69580 56.7 3.1e-49 193.4
Bhi05g01980 . 1 382 G2-like Transcription Factor Family AT1G79430 54.5 1.6e-88 323.9
Bhi05g01982 . 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi05g01981 CCT 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi10g00928 CCT 1 364 G2-like Transcription Factor Family AT1G79430 52.2 5.1e-74 275.8
Bhi01g00234 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 5.3e-39 159.5
Bhi01g00235 . 39 198 G2-like Transcription Factor Family AT1G79430 61.2 2.9e-37 153.7
Bhi03g00736 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g00737 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 1.2e-90 330.9
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT3G10760 57.8 1.2e-80 297.7
Bhi03g02516 . 1 203 G2-like Transcription Factor Family AT2G40970 61.1 1.5e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008523 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1932 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Bhi TF