Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02080 ATTATTTTTTTATTTACTTCTCTTCATATGATGGACCAATTCCTTATTAATTTTTAATTCTAATGCTAAAAGCGATTGTTATTAATTAAGAAATGATTGCAAGTCTTCAGTTTGATTATCTCTCTGAAAACGGCAGCCGGCAGCTAAATCTACCCCCATCCAGCTGCCGGCCATCAATCATTCTTCATCTCTCTATGTGCAAGAATATCTTGCTGACTGATTCTCACAACAATGAAGTTGCTTCGATGAAGAAAAAAAAGTCCTGGATTGACTTTCATTTTGATCGGCAGCAACCGAAGAAAAAGCTAACAGAAGTAATGATTTTACATCTTAGGTTTTAACACAAGTGAAGAGAGAAGTGGGGGGAGAACTGTGTTGAAGGATGGCTGGCGAATATAGGTTCGCAATGGACCAGAAGGACATTGCGAGGATATTGGTTGCCACCATTGATGATTTCACCCGAGGTCGTTTGATCAACAAAGAGCAGAGAAACCTTCACAAAGAGCAGTGTGCTGAGAGATTGGCAGCTGGTGGAAGCAATGACAAAGATACAGATGTTAGGTACTCTGATCAAGCAGTGCTGGCTAATTTGGATTGGGGTATTGAAGCCCTTGAGGAGGCTCTAAACACATCCAATTTGGAGACTAAACTTGCACGACTTGACCATGCGGAGAAGATGCTTCAAGTGTGTGCCTTGTTGAACACTAACGAGAAAACTGCCGGGGTTCCCAATTTCTACCTTTCTGCATGGGCCCACCTAAATCTTTCATATCTCTGGAAATTGCGAGGAAATGTTCACAACTCAGTCCTCCATATTCTTGAGATGTTTATTGTGGATCCTTTCTTTTCACGCAATGATTTTGCTCCTGAACTCTGGAAAGAACTCTTTCTTTCGCACATGAGCTCAATTGTTGGGTGGTATTTAGAGGAGAGGCACAGACTTGTGATCGAATTGATTCCTGATTCTTCTGATTTATCCTTCACAGCTGATTTAGATCAATTCTCCAATGAATCTTTGATATTTTCGCTTAGGCCTGATCAAGCAGAGAAATTACAGAAGTTGGAGCAGCTTTATGGAGACTCTTTGGATGAGAATACGAGGCTCTTCGCTAAATACTTCAAGGACTGTATGAATTATGATTCAAGCTCCACCAAGAAGGTTGCCCAAATGTTGCCAATCGCAGAGCCACCTATGACTCCTCTTCATGAAGTGAGCCGCTCAATTCCCGATTACATAAAATTTGGACCTATTTTACCCAAGAATGCCGGGTTTTCACCCATCATACCAAAATCTAAAGATGGTGCAACAGAATCAAGTAGGCCAAAGGGGACTTCTAGTCCAGCCAACAACACAGAGAAATTTGCAGGGTGGTATTCTCAGAATGATTCGTTAGAGGAGAATGAGGATGATTCTGAACAGGAACCTTACGATTCTTATGATCTCAGCGATACTGCGACTTATAAATTACTATCGCCTAGTAGCACAAGGACATCAGAGGATGAGCAAATAGAACTTAAAGGGGAGGTGTCGAAAATGGAGAATCGCAAACATTCTCCCACCATTTTTTCTCCAATTACATCTCCTTCAGTCCCTTCACCGAAAGTTCTCTCTCCAACAACAAATGAGAAGAAAAGTGAATCGCGTACATTGCGACTGCTATCCAGTCGTTTTGGCGAACAACGTGATGCTACCTCTGTCCTTGGATCACCAGCTACAAGAAGCGATTACAGCTTCAGTTCGGTAGAATCTGATGGTGAAAAAGATCGCCACAGGAGAAAATATAAGCAAACGCACAATGCAAACTATGACAACGTGAGTTGCCAAGACTTCAAGAATTGTTCAATCGATAAACTTGAGGAGGAAAGCAGAAGCCGGTCGTCTGAGAATGTGACACATATAGTACGACCCCCCAAAGATTTCGTATGCCCCATAACAGGTCAGATTTTCAGTGATCCTGTTACTCTCGAAACTGGACAGACTTATGAAAGAAAAGCAATTCAGGAATGGTTGAAAAGAGGAAATACAACGTGCCCCATTACGCGGCAGCCATTATCTTCAACTGTAATGCCCAAAACGAATTATGTCTTGAAAAGACTGATAACATCTTGGCAGGAACAAGATTCTGATCTTGCTCAGGATTATTTGTGGACTAGTACATCAGCAAGTACTGTTGGTTCTACCTTTAAAAAGAGGAGTTCTATGGCATCTACTCCTTGCCGATCATTTCACGGTCCTCTTAACAGCACGTACGAGTTTCTTATCCAAAAAGGCAAAAGATTAATGCAAGAAGCAGTGTCTTTATCGCCCACTAGTGTAATATCTCAAGCCACTGTCGAGAAAATCATTAACAGTTTAAAACCTTTTGTCTCTTGTCTTTGTAATTTCGAGAACTTGAAACAATGTGAGACTGCTGTGCTCGCTATAGCAGGGTTCTGGAAGGACTCAAAAGGTGACCTAGCAGTCCATTCCTACTTATCCGAATTGGCTGTTGTGAACGGCTTTATGGAAATACTGTTAAATTCTCGGGAAAGAGAAGTCCTTAGAACCTCGATTTATGTTCTTTCTGAGATTATTTGTGCAGATGGAAGTGTTGGAGAGTCCCTTAGTAGTCTAGATTCAGATTTTGATTGCCTAGCATCTTTGCTGACGAGTGGATTGTCAGAGGCTTCTGTTCTTATGTGCCTGCTAAGGCCCACATTTACTCAGTTGTCAGCTCATGACCTTATACCTTCCCTAGCCCAGCTGCTTCAAAAGAAAAATGAAGATTTTGATGATCTGCCATTTGTAGTAGAGCCAAAAGATGCTGCTATCGCAATGCTTGAACAGGTTTTTATGGGAGGGGATGAAAATAGCCAATCTCGAAATGTGGAGAATCTTATCTCTGCTGAAGGAATCCCTGCATTAGTTAAGTTTCTGGATGAGGCAGAAGTGAGGAGGCCAATACTTTCCATACTTTTATGTTGTATGCGAGGTGACAAAGGTTGCAAGGACTCAATTGCAGAGAAGATTGAGCTTGCTCCAATTCTTGAGCTATTTCATGCAGGAAATGAGGACGATAGAGGCTTGTGTGTGGCTTTTCTGTCAGAGCTGGTTCAAATGAATAGGAGGACACAATGCAATCAAATTTTGCAGAAAATTAAAGATGAAGGAGCATTCAGTACGATGCATACACTTGTCACACATCTTCAAATGGCTGCAACTGAGCAACACCCGGGCATTGCTTCTCTTCTTCTCCAGCTGGATCTACTGGTTGAACCACGAAAAATGAGCATTTACCGAGAAGAATCTATAGATGCACTGTTCGAAGCTTTTCATAGAAATGACAACTATAGCTCTCAAATTGCAGCTGTAGATGCTTTATTATATTTATCTGGGCGATTGACTTCCTCAGGAAAGTGCTATACAAAAGTGTGGTTGCTCAAACTTGCAGGATTTGATCAGCCTTACAATGCTTTAATGAAGGACGAGGAACTGAGGAAGCCTGACAACGAATTATCAGAGAGAGAGGAGGAAGAGAAGGCAATCAACGTATGGGAAAAAAGGGTAGCACTTGTTCTTTGTAACCATGAAAGGGGGTACATTTTTAAAGTTATGAAAGAATGCTTGAAGAGTAAATCCTTAGAGATGGCAAAGTCCTGTCTTGTCATCGTTTCTTGGCTCTGCCACATGGTTTCGATGCTCCCAGAAACTGGGGTACGAGAGACTGCTCGCAGGTTCTTGCTTGATGAACTTGTAAACGTTCTACAGTCTTCTAATAGCCTGGAGGATAAGATTTTGGCATGTCTTGCTTTAAAAACTTTCATCAGCGATCCAGCTGCACTTGAGGGACTAGGACTTCATGCAAGATCCATCAATAAAACGTTGAGAAAACTCAGGAAAAACTCATCGGTCGTCAATGATATAATGAAAGCCTTGATGAACTTGCCATCTGTTGATGCAACAGAGCTCTGGAGTTACACTGAAGTTGGTGCACTAGATTCCAGCTCAAATGGAGAGGTTTTGTCGTTGGTTCATTTGGATGGGCGAGTTTTAAGCAGTCACTCGGATGGAACCATCAAGGTTTGGGATGCTGGAAATAAAAGGTTAATCCAAGAAGCTCGCAAGCACACAAAAGCAGTAACATGCCTTTGTGTTTCCTCTTCGGGGGACACAATATACAGCGGTTCCTTAGACAAAACAATTCGGGTATGGATCATCAAATCTGAAGAAATACAGTGTGTTCAAGTCCACGAAGTGAAGGAGCCAGTTTATGACTTAAAAGTTAATGCCAATGTCGCATGCTTTGTTTCTCAAGGATCTGGCGTTAAGGTGTTCAACTTCTCTGGAATACCAAAGCATATAAATTTCAACAAATACGTCAAGTGCCTGGCCTTAACAGAAGATAAAGTCTATTGCGGTTGCTCTGGTGACTGCATATTGGAGGTGGATTTGTCCAAAAATACTACAAGCACATTCTATACTGGTGTACGAAAATTGCTTTGGAAACAAAACATCTACTCCTTACACCTCCAAGGGGACCTACTGTTCGCTGCTGGTTCAGTAGTGGATGGAACAGCAGGAAAGATATTTTCGCTGTCAAACAAGACACCAGTAGGATCCTTTTCAACTGTAGTTGACATGCATCACATGGCCGTAAGCACCGACTTCTTGTTTACAGCCTCCAGATTGGGCATGTTAATAGAGATATGGTCGAAAGAAAAATACACAAAAATTGGTTCAATTAAATTAGGTAGTACTGCTAATGGTAGCCACACAAAGATTACTTCGCTAATTTCAGATGATGGAGGATTGCTACTTGCTGGTACCTCCGATGGAAAGATACAGGTTTGGTCTCTGGAATGACCACCGTTAACACCATTAGGCAAAAATCGAATCTCTACCATATTTTACGTGTAAATACGAATTCAACTCTTATTATCCTTCTATATTTATAGATACAATTGGTGCGTTGAATAAATATTATCACATGTTAAATACATTCCATGTACAAACCCCTTAGGAATAAAGACCCTATCATTATTAATT 5026 41.29 MAGEYRFAMDQKDIARILVATIDDFTRGRLINKEQRNLHKEQCAERLAAGGSNDKDTDVRYSDQAVLANLDWGIEALEEALNTSNLETKLARLDHAEKMLQVCALLNTNEKTAGVPNFYLSAWAHLNLSYLWKLRGNVHNSVLHILEMFIVDPFFSRNDFAPELWKELFLSHMSSIVGWYLEERHRLVIELIPDSSDLSFTADLDQFSNESLIFSLRPDQAEKLQKLEQLYGDSLDENTRLFAKYFKDCMNYDSSSTKKVAQMLPIAEPPMTPLHEVSRSIPDYIKFGPILPKNAGFSPIIPKSKDGATESSRPKGTSSPANNTEKFAGWYSQNDSLEENEDDSEQEPYDSYDLSDTATYKLLSPSSTRTSEDEQIELKGEVSKMENRKHSPTIFSPITSPSVPSPKVLSPTTNEKKSESRTLRLLSSRFGEQRDATSVLGSPATRSDYSFSSVESDGEKDRHRRKYKQTHNANYDNVSCQDFKNCSIDKLEEESRSRSSENVTHIVRPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSSTVMPKTNYVLKRLITSWQEQDSDLAQDYLWTSTSASTVGSTFKKRSSMASTPCRSFHGPLNSTYEFLIQKGKRLMQEAVSLSPTSVISQATVEKIINSLKPFVSCLCNFENLKQCETAVLAIAGFWKDSKGDLAVHSYLSELAVVNGFMEILLNSREREVLRTSIYVLSEIICADGSVGESLSSLDSDFDCLASLLTSGLSEASVLMCLLRPTFTQLSAHDLIPSLAQLLQKKNEDFDDLPFVVEPKDAAIAMLEQVFMGGDENSQSRNVENLISAEGIPALVKFLDEAEVRRPILSILLCCMRGDKGCKDSIAEKIELAPILELFHAGNEDDRGLCVAFLSELVQMNRRTQCNQILQKIKDEGAFSTMHTLVTHLQMAATEQHPGIASLLLQLDLLVEPRKMSIYREESIDALFEAFHRNDNYSSQIAAVDALLYLSGRLTSSGKCYTKVWLLKLAGFDQPYNALMKDEELRKPDNELSEREEEEKAINVWEKRVALVLCNHERGYIFKVMKECLKSKSLEMAKSCLVIVSWLCHMVSMLPETGVRETARRFLLDELVNVLQSSNSLEDKILACLALKTFISDPAALEGLGLHARSINKTLRKLRKNSSVVNDIMKALMNLPSVDATELWSYTEVGALDSSSNGEVLSLVHLDGRVLSSHSDGTIKVWDAGNKRLIQEARKHTKAVTCLCVSSSGDTIYSGSLDKTIRVWIIKSEEIQCVQVHEVKEPVYDLKVNANVACFVSQGSGVKVFNFSGIPKHINFNKYVKCLALTEDKVYCGCSGDCILEVDLSKNTTSTFYTGVRKLLWKQNIYSLHLQGDLLFAAGSVVDGTAGKIFSLSNKTPVGSFSTVVDMHHMAVSTDFLFTASRLGMLIEIWSKEKYTKIGSIKLGSTANGSHTKITSLISDDGGLLLAGTSDGKIQVWSLE 1486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 59435059 59442626 + XM_039041062.1 Bhi09g02080 44697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02080 1486 ProSiteProfiles Trp-Asp (WD) repeats profile. 1239 1270 IPR001680 GO:0005515
Bhi09g02080 1486 ProSiteProfiles Trp-Asp (WD) repeats profile. 1216 1238 IPR001680 GO:0005515
Bhi09g02080 1486 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1486 - -
Bhi09g02080 1486 Gene3D - 1160 1319 IPR015943 GO:0005515
Bhi09g02080 1486 ProSiteProfiles Trp-Asp (WD) repeats profile. 1465 1486 IPR001680 GO:0005515
Bhi09g02080 1486 CDD RING-Ubox_PUB 513 555 IPR045210 -
Bhi09g02080 1486 Pfam WD domain, G-beta repeat 1241 1270 IPR001680 GO:0005515
Bhi09g02080 1486 Pfam WD domain, G-beta repeat 1456 1484 IPR001680 GO:0005515
Bhi09g02080 1486 MobiDBLite consensus disorder prediction 311 335 - -
Bhi09g02080 1486 SUPERFAMILY RING/U-box 504 580 - -
Bhi09g02080 1486 SMART Ubox_2 512 576 IPR003613 GO:0004842|GO:0016567
Bhi09g02080 1486 MobiDBLite consensus disorder prediction 336 350 - -
Bhi09g02080 1486 MobiDBLite consensus disorder prediction 372 388 - -
Bhi09g02080 1486 MobiDBLite consensus disorder prediction 424 452 - -
Bhi09g02080 1486 MobiDBLite consensus disorder prediction 298 466 - -
Bhi09g02080 1486 SUPERFAMILY WD40 repeat-like 1214 1485 IPR036322 GO:0005515
Bhi09g02080 1486 MobiDBLite consensus disorder prediction 351 371 - -
Bhi09g02080 1486 Pfam U-box domain 510 580 IPR003613 GO:0004842|GO:0016567
Bhi09g02080 1486 SUPERFAMILY ARM repeat 712 1149 IPR016024 -
Bhi09g02080 1486 Gene3D - 643 953 IPR011989 -
Bhi09g02080 1486 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1486 - -
Bhi09g02080 1486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 583 IPR013083 -
Bhi09g02080 1486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1452 1486 - -
Bhi09g02080 1486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1239 1270 - -
Bhi09g02080 1486 ProSiteProfiles U-box domain profile. 508 583 IPR003613 GO:0004842|GO:0016567
Bhi09g02080 1486 Gene3D - 1320 1486 IPR015943 GO:0005515
Bhi09g02080 1486 MobiDBLite consensus disorder prediction 389 416 - -
Bhi09g02080 1486 SMART WD40_4 1232 1271 IPR001680 GO:0005515
Bhi09g02080 1486 SMART WD40_4 1191 1229 IPR001680 GO:0005515
Bhi09g02080 1486 SMART WD40_4 1276 1312 IPR001680 GO:0005515
Bhi09g02080 1486 SMART WD40_4 1446 1484 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02080 - - - csv:101221826 2534.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01028 Bhi-Chr1:18653049 Bhi09g02080 Bhi-Chr9:59435059 1.13E-17 dispersed
Bhi01g01029 Bhi-Chr1:18653049 Bhi09g02080 Bhi-Chr9:59435059 8.70E-18 dispersed
Bhi02g01169 Bhi-Chr2:27284414 Bhi09g02080 Bhi-Chr9:59435059 1.66E-11 dispersed
Bhi08g00911 Bhi-Chr8:30191295 Bhi09g02080 Bhi-Chr9:59435059 1.96E-11 dispersed
Bhi08g00912 Bhi-Chr8:30191295 Bhi09g02080 Bhi-Chr9:59435059 1.94E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39