Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02154 CCGATGACGATGAGGAATTGAGATTCTAAGGGACGAAAATCGAAGAGCCGTTTTTGTGGCTCTGGCTCTCGCCGTGACGGAGGTGGCGACGGCGACGGCCAGACGGCAGCGGCGGTCGATAACGGTGACGACGGAGGAGACGACCTACTGTTGTGGAATAACAGAGGCTTTTAAAAAATTCTTCTAGCTTTTTATCTTTTAGCCTTTTTCTCTCTCTTGTCTCTCCCTCTTCCTTCAAAAGCCGTTTGCAACTTCCTAGACATTGCTGCCTTTTCGATTTAAAAGGGAGATTCAAGGTGGAGGGAAAAACGCTAATCGCTATATTTTCTCTAATTCGATCCATCAAAATCCTCCGAGTTTTGCAGAATCACTCGGAGTATTTATTTCTCTCCGCTGCTGTTCTCATTTTTTGCGTGAATTGAAACTGCTGTCACGATGCCTCTGAGAGGCATTATTCGTGAGATGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAGGAAAGTTAGGGAGGGAGTTCAAATGCGTCATCTCGGAAAGTCGCATATTGTACCGGAACAGCCTTCTTCATCTTCTCCGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGATATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCTCGCCGGGATGTTGTTACTTGTGCTTCAGTTTGCAGGTCATGGCGGATAGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACTTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGGGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTTAGTAAATTGTTGCTAACTGCGAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACCATTACATAGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAATTTTCAATTTATGACAGTCAGCCTCCTCATGACCCAAAATTGCGAACCAGTAGATCGAAAAGAAGAATCCATTTGAAACAGGTCTCTCCAAGTAAAACTCCAACGAACTATAAAGTCGCTGCCGTAGCTTACGAGCTCAACGTCCTCCGCACCAGAGGTCCAAGAAGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCAGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTTAAAGACTGTATCAACGAGCATCATCCATCAACACCAATTTGCAAAGGAAAGAAGCCGATAACCGAGTCCCCAACCGAGTCCCCTGACCCTCAAGAATCGATAGCTCCATTAGTATTGAAGAACAAAGCTCCGAGATGGCATGAGCAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTCGCCTCAGTGAAGAACTTTCAGCTGGTTGCCGCAGCGGAGACAAGTCAAAATGTATCCGCAGCTGAACAAGAGAGAGTAATTTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTTTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCTTGTGAATGAAACTCCATTACTAAACTTGCTCCAAAATTTTCCAACTGTATATATTATTTTGGAAAGAAGCTTCGTTTAGACACTATATTCAATAATTATGCAACAATTTGTGACGTTGGTGGGCAGTAAATTATGAAAATGAGCACATGCTCCCAAATCTTTATTATCCAA 1830 45.19 MPLRGIIREMSEIREGSGNSSRKVREGVQMRHLGKSHIVPEQPSSSSPVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRIVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNHYIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYKVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCINEHHPSTPICKGKKPITESPTESPDPQESIAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 60832690 60835830 - XM_039043364.1 Bhi09g02154 44771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02154 410 Pfam F-box domain 56 103 IPR001810 GO:0005515
Bhi09g02154 410 Gene3D Tubby Protein; Chain A 114 410 IPR025659 -
Bhi09g02154 410 SUPERFAMILY Tubby C-terminal domain-like 105 410 IPR025659 -
Bhi09g02154 410 Pfam Tub family 117 405 IPR000007 -
Bhi09g02154 410 Gene3D - 51 105 - -
Bhi09g02154 410 SUPERFAMILY F-box domain 46 99 IPR036047 GO:0005515
Bhi09g02154 410 ProSitePatterns Tub family signature 1. 338 351 IPR018066 -
Bhi09g02154 410 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Bhi09g02154 410 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Bhi09g02154 410 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Bhi09g02154 410 PRINTS Tubby superfamily signature 320 337 IPR000007 -
Bhi09g02154 410 PRINTS Tubby superfamily signature 338 354 IPR000007 -
Bhi09g02154 410 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Bhi09g02154 410 PRINTS Tubby superfamily signature 388 410 IPR000007 -
Bhi09g02154 410 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 410 - -
Bhi09g02154 410 MobiDBLite consensus disorder prediction 292 314 - -
Bhi09g02154 410 ProSitePatterns Tub family signature 2. 395 410 IPR018066 -
Bhi09g02154 410 PANTHER TUBBY-RELATED 1 410 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02154 Bhi-Chr9:60832690 Bhi03g01305 Bhi-Chr3:27034614 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1937 PF01167 Tub 4.50E-105 CL0395 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02154 K19600 - csv:101222500 776.933