Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bhi09g02154 | CCGATGACGATGAGGAATTGAGATTCTAAGGGACGAAAATCGAAGAGCCGTTTTTGTGGCTCTGGCTCTCGCCGTGACGGAGGTGGCGACGGCGACGGCCAGACGGCAGCGGCGGTCGATAACGGTGACGACGGAGGAGACGACCTACTGTTGTGGAATAACAGAGGCTTTTAAAAAATTCTTCTAGCTTTTTATCTTTTAGCCTTTTTCTCTCTCTTGTCTCTCCCTCTTCCTTCAAAAGCCGTTTGCAACTTCCTAGACATTGCTGCCTTTTCGATTTAAAAGGGAGATTCAAGGTGGAGGGAAAAACGCTAATCGCTATATTTTCTCTAATTCGATCCATCAAAATCCTCCGAGTTTTGCAGAATCACTCGGAGTATTTATTTCTCTCCGCTGCTGTTCTCATTTTTTGCGTGAATTGAAACTGCTGTCACGATGCCTCTGAGAGGCATTATTCGTGAGATGAGTGAAATACGAGAAGGCAGTGGGAATTCATCGAGGAAAGTTAGGGAGGGAGTTCAAATGCGTCATCTCGGAAAGTCGCATATTGTACCGGAACAGCCTTCTTCATCTTCTCCGGTTCCGATTGAACAGAGCCGTTGGGCGAATTTGCCTCCGGAGCTTCTTTTGGATATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCTCGCCGGGATGTTGTTACTTGTGCTTCAGTTTGCAGGTCATGGCGGATAGTTACAAAGGAAGTCGTTAGGACTCCCGAACAGTGTGGGTGGATCACTTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGGGACACTCCGATCCAATGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTTAGTAAATTGTTGCTAACTGCGAAAAGAATCCGACGAGCAATGAGTACAGATTTCATTGTATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACCATTACATAGGAAAGTTGAGGTCAAATTTTCTGGGGACCAAATTTTCAATTTATGACAGTCAGCCTCCTCATGACCCAAAATTGCGAACCAGTAGATCGAAAAGAAGAATCCATTTGAAACAGGTCTCTCCAAGTAAAACTCCAACGAACTATAAAGTCGCTGCCGTAGCTTACGAGCTCAACGTCCTCCGCACCAGAGGTCCAAGAAGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCAGTGGAGGAGGGTGGCACTGCCCCAACTCCAACAGAGTTTAAAGACTGTATCAACGAGCATCATCCATCAACACCAATTTGCAAAGGAAAGAAGCCGATAACCGAGTCCCCAACCGAGTCCCCTGACCCTCAAGAATCGATAGCTCCATTAGTATTGAAGAACAAAGCTCCGAGATGGCATGAGCAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTCGCCTCAGTGAAGAACTTTCAGCTGGTTGCCGCAGCGGAGACAAGTCAAAATGTATCCGCAGCTGAACAAGAGAGAGTAATTTTGCAGTTTGGTAAGATTGGGAAGGATATTTTCACGATGGATTATCGCTATCCTCTTTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACCAAGCCAGCTTGTGAATGAAACTCCATTACTAAACTTGCTCCAAAATTTTCCAACTGTATATATTATTTTGGAAAGAAGCTTCGTTTAGACACTATATTCAATAATTATGCAACAATTTGTGACGTTGGTGGGCAGTAAATTATGAAAATGAGCACATGCTCCCAAATCTTTATTATCCAA | 1830 | 45.19 | MPLRGIIREMSEIREGSGNSSRKVREGVQMRHLGKSHIVPEQPSSSSPVPIEQSRWANLPPELLLDIIQRVEASETSWPSRRDVVTCASVCRSWRIVTKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTDFIVSLVPDDFSRASNHYIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYKVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCINEHHPSTPICKGKKPITESPTESPDPQESIAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 60832690 | 60835830 | - | XM_039043364.1 | Bhi09g02154 | 44771 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bhi09g02154 | 410 | Pfam | F-box domain | 56 | 103 | IPR001810 | GO:0005515 | |
Bhi09g02154 | 410 | Gene3D | Tubby Protein; Chain A | 114 | 410 | IPR025659 | - | |
Bhi09g02154 | 410 | SUPERFAMILY | Tubby C-terminal domain-like | 105 | 410 | IPR025659 | - | |
Bhi09g02154 | 410 | Pfam | Tub family | 117 | 405 | IPR000007 | - | |
Bhi09g02154 | 410 | Gene3D | - | 51 | 105 | - | - | |
Bhi09g02154 | 410 | SUPERFAMILY | F-box domain | 46 | 99 | IPR036047 | GO:0005515 | |
Bhi09g02154 | 410 | ProSitePatterns | Tub family signature 1. | 338 | 351 | IPR018066 | - | |
Bhi09g02154 | 410 | PRINTS | Tubby superfamily signature | 172 | 188 | IPR000007 | - | |
Bhi09g02154 | 410 | PRINTS | Tubby superfamily signature | 188 | 212 | IPR000007 | - | |
Bhi09g02154 | 410 | PRINTS | Tubby superfamily signature | 236 | 263 | IPR000007 | - | |
Bhi09g02154 | 410 | PRINTS | Tubby superfamily signature | 320 | 337 | IPR000007 | - | |
Bhi09g02154 | 410 | PRINTS | Tubby superfamily signature | 338 | 354 | IPR000007 | - | |
Bhi09g02154 | 410 | PRINTS | Tubby superfamily signature | 367 | 386 | IPR000007 | - | |
Bhi09g02154 | 410 | PRINTS | Tubby superfamily signature | 388 | 410 | IPR000007 | - | |
Bhi09g02154 | 410 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 410 | - | - | |
Bhi09g02154 | 410 | MobiDBLite | consensus disorder prediction | 292 | 314 | - | - | |
Bhi09g02154 | 410 | ProSitePatterns | Tub family signature 2. | 395 | 410 | IPR018066 | - | |
Bhi09g02154 | 410 | PANTHER | TUBBY-RELATED | 1 | 410 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bhi09g02154 | Bhi-Chr9:60832690 | Bhi03g01305 | Bhi-Chr3:27034614 | 0 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
1937 | PF01167 | Tub | 4.50E-105 | CL0395 | Bhi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bhi09g02154 | K19600 | - | csv:101222500 | 776.933 |