Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02202 ACATTACGAGGTTTATTGTAAAACCTGCAATACCTTTCAACAAATTAGCCCCAAACTTTCCATTTCCGGCAATTCCTCTTCTCCTCTAATTCATTTCTCCCTTTTCTTCCTTCACTCCTCCTCCTCCATTTCCCCTCACACAAGAAGAAGAACAAAAAATGGCTCGTGGGAAGATCCAGATCAAGAGAATCGAAAACCCTACAAACAGGCAAGTCACTTACTCCAAGCGACGCAACGGCCTCTTCAAGAAAGCCAACGAACTCACCGTTCTCTGCGATGCCAAAGTCTCCATTATCATGTTCTCCAGCACTGGAAAACTCCATGAGTATATCAGCCCTGCCACTTCGACCAAGGAGCTTTTTGATCAGTACCAGAAGACTTTAGGCGTTGATTTATGGGTCTCTCACTATGAGAGAATGCAAGAGAATCTCAAGAAGCTCAAAGATGTGCATCGAAATCTCCGGAGGCAGATTAAGCAGAGGATGGGGGAATGTATGAATGATCTGAGCTTTGAAGAACTGCGCTGTCTCGAACAAGATATGGATAACGCTGTCAGGATCATCCGTGAACGCAAGTATCGGGTGATAACAAACCAGATTGAAACGCACAAGAAGAAGTTAAAGAGCGTAGGAGATATACACAAGAGGCTTCTCCAGGAGTTTGACATTGCAACAGAGGAAGATCCACATTATGGGCTTGTAGACAATGGAGGAGTAGGAGTAGGAATAGGAGATTATGATTCAATTATGGGGTTCTCAGGCGGTGGGCATCCTCGCATATTCGCATTGCGACTCCAGCCTAACCACAACGACAACCACAACCATCCCAACATTCACGTTCATCATCCTCCCCCTTCAGATCTCACTACCTATCCACTCCTCGAGTAGTTCATTATGCCAAATTACCACTCTCTTTTACTATAATGCTTGCATGACTTAATTCCCATGCCCATCAAAACCCAAACTCACATCTCAACTTTATCTCTACATATATGTTTTTATTTTGTTCCCCTTTTTTCCTTCACTCACCTGTTGTTTCACGACACACCCTTTCGAGGAGATTATGAATTGTTTCTAGCTGATCATATGGGGTTTCTTTTCTTGTCTAAGTTTGTGATGAGTGATGACACATCACGGGGTTATTTGGAGACACACCATACTCTCTTTCTCAACTTCTTAATAAACCCTACCCATTGACTTTGTTTTTCTTTGTTTCATCTCAAATATTGCCTATTATAAACTCTA 1244 42.6 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWVSHYERMQENLKKLKDVHRNLRRQIKQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVITNQIETHKKKLKSVGDIHKRLLQEFDIATEEDPHYGLVDNGGVGVGIGDYDSIMGFSGGGHPRIFALRLQPNHNDNHNHPNIHVHHPPPSDLTTYPLLE 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 62082680 62087489 + XM_039041252.1 Bhi09g02202 44819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02202 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi09g02202 242 Coils Coil 84 111 - -
Bhi09g02202 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi09g02202 242 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi09g02202 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi09g02202 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi09g02202 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi09g02202 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi09g02202 242 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Bhi09g02202 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
Bhi09g02202 242 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Bhi09g02202 242 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bhi09g02202 242 PANTHER APETALA3 1 223 - -
Bhi09g02202 242 MobiDBLite consensus disorder prediction 213 242 - -
Bhi09g02202 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi09g02202 242 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02202 Bhi-Chr9:62082680 Bhi09g02715 Bhi-Chr9:72787432 2.04E-41 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1941 PF01486 K-box 7.40E-21 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02202 K09264 - csv:101218008 438.343