Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02220 TTGCAAGGATGACGGCACAGGATTCGAGAAAAATTCTTCCCAAGGAGTTTTATCCGTCGTGGGTTGTATTTACGCAGCGACAGAAGTTAACTTGGCTCAATCTTCAGCTTGATAAAATCTGGCCATATGTTGACGCGCATCGGAGCTGATAAGGAGCAATGTGGAGCCGGTTTTAGAACAATTTCGACCGGCAATATTATCTTCTTTGAAGTTCTCAAAGTTGACCCTGGGTACTGTCGCTCCAAATTTTACAGGAATTGCTGTACTTGAAGACGAGCCAGAAACTGGTGGAATAACTTTGGAGTTGGAGATGCAATGGGATGGTAATCCAAACATTGTTCTTGACATCAAAACTAAACTCGGCGTTTCCTTACCAGTACAGGTAAAAGATATTGCATTCACAGGGCTTTTCAGATTAATATTCAAGCCATTGGTTGATGAGTTTCCTTGCTTTGGAGCAGTGTGTTATTCTCTGAGGAAAAAGAAAAATCTTGATTTTAAACTTAAGATTATTGGAGGAGACATATCATCCATTCCTGGGGTTTCTGATGCTATTGAGGAAACAATTCGAGATGCTATTGAAGGTACTATAACATGGCCAGTTCGGAAGATTGTGCCCATCATAGCAGGAGATTATAGCGATTTAGAGGCAAAGCCTGTTGGAACGCTAGAAGTGAAGCTTGTGCAGGCAAAGGAATTAACCAATAAAGACATTATAGGAAAGTCGGATCCTTATGCTGTGCTGTTTGTACGGCCATTGAAAGAGAGAATGAAAACAAGTAAAACCATTAATAATCAATTGAATCCCATATGGAATGAGCACTTTGATTTCGTTGTTGAAGATGCATCTACTCAGCACTTGACTATAAGAGTTTTTGACGATGAAGGAGTTCAGGCCTCTGAACTACTTGGCTGTGCTCAAGTAGCATTAAAGGACCTTGAGCCCGGTAAAGTGAAGGATGTTTGGTTGAAGCTGGTCAAAGATTTGGACATCCAAAGAGATAACAAATACAGGGGTCAGGTGCATTTGGAGCTTCTTTACTATCCCTTCGGCACTGATCAGAGCCTCTATATAAACCCATTTAACCCGGATTATGCATTGACCTCAGTGGAGAAGGCTCTAAAGCCGGCTCCGAATGGTTCAGAAGATGCAGATTCTGGAAAACAAAGCTCCCCAAAGAAGAGGGATGTGATTGTAAGAGGAGTGCTATCTGTGACAGTAATTGCTGCCGAAGATTTGCCTGCTGTAGATTTCATGGGAAAAGCCGACCCCTATGTTGTTCTCATTATGAAGAAATCCGAGACCAAAGTTAAAACCAGGGTTGTACATGACACCCTGAATCCTGTCTGGAATCAAACGTTCGACTTTCTGGTGGAGGATGCATTACACGATATGCTAATTGTAGAGGTCTGGGATCATGACACTTTTGGAAAGGATAAACTGGGGAGGGTCATAATGACGTTGACAAGAGCGATATTGGAAGGGGAAATTCAGGACTGTTTTCCACTGGAAGGAGCCAAATCAGGACGGATTTATCTGCATCTCAAGTGGGCAGCTCAGCCAATATTCCGAGATACTTGATGAACAAAAAGAAAAAAAGTCTCCTCAATTTTTCAAGATTGACATTCATTGATTGATGAACCGAAAGCTGCAGCGCCTCGTCGTCATCTTACTTAGGTACTTGATTTAAATTATGTAATTAAAATACAAAGTCAGGGGTGGGCGTTCATCTCTTCTGATCAATTCTTTCATTTGTGGGCTGTGTTTAAATAGATTAGCGTTTATATGTTTCAATGTGTCATTATTTCCATTCTTTTATTTCTTCTGTAGTTTAGCTTATTGAGTGTGGTCAAGCGATTGGATATCGCTCCAAATATATGGGCCTTAACTAATAGGCCCTGAGAATTGTCATAGAAATTATTGTAGACGAAACTTTGATGAACCAAAATCAAGTTAACACATATTGTTAGGGTTTTCTTTTATCTTTCTTTCTGGTTGAGTTTTAGGTTTAATGAGTGTGGTGTGAGGAATGTAATTGTCAATCCAAGTTACAAATGCCTTGATTGAATTCAAATAAAT 2080 40.24 MQWDGNPNIVLDIKTKLGVSLPVQVKDIAFTGLFRLIFKPLVDEFPCFGAVCYSLRKKKNLDFKLKIIGGDISSIPGVSDAIEETIRDAIEGTITWPVRKIVPIIAGDYSDLEAKPVGTLEVKLVQAKELTNKDIIGKSDPYAVLFVRPLKERMKTSKTINNQLNPIWNEHFDFVVEDASTQHLTIRVFDDEGVQASELLGCAQVALKDLEPGKVKDVWLKLVKDLDIQRDNKYRGQVHLELLYYPFGTDQSLYINPFNPDYALTSVEKALKPAPNGSEDADSGKQSSPKKRDVIVRGVLSVTVIAAEDLPAVDFMGKADPYVVLIMKKSETKVKTRVVHDTLNPVWNQTFDFLVEDALHDMLIVEVWDHDTFGKDKLGRVIMTLTRAILEGEIQDCFPLEGAKSGRIYLHLKWAAQPIFRDT 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 62558801 62562802 + XM_039041377.1 Bhi09g02220 44837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02220 423 PANTHER SYNAPTOTAGMIN-4 1 422 - -
Bhi09g02220 423 Pfam C2 domain 298 398 IPR000008 -
Bhi09g02220 423 Pfam C2 domain 118 222 IPR000008 -
Bhi09g02220 423 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 297 414 IPR035892 -
Bhi09g02220 423 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 105 IPR031468 GO:0008289
Bhi09g02220 423 Gene3D C2 domain 114 254 IPR035892 -
Bhi09g02220 423 ProSiteProfiles C2 domain profile. 281 398 IPR000008 -
Bhi09g02220 423 SMART C2_3c 119 219 IPR000008 -
Bhi09g02220 423 SMART C2_3c 299 397 IPR000008 -
Bhi09g02220 423 PRINTS C2 domain signature 315 327 IPR000008 -
Bhi09g02220 423 PRINTS C2 domain signature 341 354 IPR000008 -
Bhi09g02220 423 PRINTS C2 domain signature 363 371 IPR000008 -
Bhi09g02220 423 ProSiteProfiles C2 domain profile. 99 220 IPR000008 -
Bhi09g02220 423 Gene3D C2 domain 282 416 IPR035892 -
Bhi09g02220 423 CDD C2 300 400 - -
Bhi09g02220 423 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 116 247 IPR035892 -
Bhi09g02220 423 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 422 IPR045050 GO:0008289
Bhi09g02220 423 CDD C2 120 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02220 - - - csv:101210249 818.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02220 Bhi-Chr9:62558801 Bhi04g00131 Bhi-Chr4:3298165 2.85E-61 dispersed
Bhi09g02219 Bhi-Chr9:62558319 Bhi09g02220 Bhi-Chr9:62558801 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70