Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02416 AGAAAATACATGTAAAATGGTCCGAGAAATGGAACCCCATATTTGAGAGCCTCAATTTTATAATCCTCTTATCCAGTTTCCGTTCGTCTGAATTCCGATGGCAGTGAAAATTTTTGGATATTTCTATAATAACCTTTCAACTCATCGTCTTTCCCTCCAGCAACTCTTCAACTCAAGCCAAAGCAGGATGTTTCTCCATATAACAAAAAAAACACACACCCCACTCTAAGTTCTGAAGATGGACAAAGTGAATTCAGTTGTTTAGATTGCACACCCAGCGTAAGTTGTGGAATAGTGCGCTCAAGAACAAAATTAATGAACATTTTGATAGAAAAAGGGAAACCTCAGGAAGCACAGAACGTTTTTGACAATTTGATTGCGGAGGGGCATAGGCCCTCTCTAGTAACATATACAACCCTGCTGTCTGCATTGACTGTCCAAAAGCGCTTCAAGTGTATAAATTCAGTTATACAGATGGTGGAAGAAAAGGGAATGATTCCAGACTCTATATTTTTTAATGCTGTTATTAATGCTTTTTCCGAAGCTGGTAATGTAGAAGAAGCCATGCTAACTTTTAGAAAAATGAAGGCTAGTGGACTAAGGCCAGGTACAAGCACTTTCAACACTTTGATAAAAGGATATGGCATTGCCGGTAAGCCTGAAGAAACTGTAGAACTGCTGGACTTGATGTACAGAGAGGAAAATTTGAAACCCAATCTGAGAACTTGTAATGTACTTGTCAGAGCATGGTGTAAGAAGAAAAAAATCGCAGAGGCATGGAATGTGGTGCAAAATATGGTAGCCCTGGGAATCAAACCAGATGCTGTTACTTACAACACCATAGCAACTGCTCATGCTCAGAGTGGAGAAACAGATCGAGCTGAAGAGATTATTAAACTGATGCAAGATAACAATATTCAACCTAATCAGCGGACTTGCAGCATAGTGGCTTGTGGATATTGCAAGGAAGGTAGACTAAAGGAGGCCATGAGGTTTGTATACAAGATGAAGGATCTTGGCGTTCAGCCTAATTTGGTTCTTTTTAACTCGCTGATCAAGGGATTTGTGGAGTCGATGGACAGAGATGGTGTTGACAAGGCTTTGATGTTGATGAAAGAATTTGGAGTCAAGCCAGATGTAATTACTTTTAGCACAGTAATGAATGCGTGGAGCACGGCTGGATTCATGGTGAAGTGCAGAGAAGTTTTTGATGAGATGGTGAAGGCTGGTATCGAACCCGATGCACATGCGTACAGCATTCTAGCGAAAGGTTACGTCCGTTCACAAGAACCCGAAAAGGCTGAAGAACTATTAAATACCATGACAAGATATGGAAAACGTCCAAACGTTGTTTTCTTTACAACCATCATTAGTGGATGGTGCAGTTCTGGCAGAATGGATAACGCCATAAAGATTTTAAACAACATGTGTGAATATGGAGTTTCTCCTAATTTGAAGACATTTGAGACTATGATATGGGGATATGGAGAGGCAAAACAGCCATGGAAAGCAGAAGAAATGCTTCAAATAATGGAGGAATTCAAAGTTAAACCTGAGAAATCTACAATCTTATTAGTTGCAGAAGCCTGGCGATCGATTGGATTGACAAAAGAAGCAAACAGAATTATGGCCATTATGAAACGCATGGAAACCACTGATCAAATAGTGACGAAGAACGATATGCGAGCGGAGAACTCGGACAAGTTCTATAAGAAGCAGCTTTCTGGTACCTCTCATACCAATATATTGCAGATACCAAATGCTAATGCAGTTGATCAAAAGGGTTCAACCACTGGAAATAAAAGAAACCGTGTCTTACTGAGAGATGTTGATTCTTCTTTAGAAAGTTCGTGGCTTGCAACAAAATCAATTTACCAGACTCGCACTTGCAAGTTTGGGGAAAGGTTGCCTATCATCTCTCGCAAGCAGTCTCAAGCACAACTTGGTATGTACAGTCATTTCACACATTCATGTTTACTCGTGACATTGATGTAATCATTTCACACATTCATGTACAGTCGTGACATTGATGTAAAGGGCAACATAATAGATGAACTACCTTTTTTTTTTTCCTAAAGATTACTCCGGAAGGTTTTATTAGGAATATATTAGTAATTAGTTAAGTCAAAATGAGTAAAGCTCGACTGGGATAGTACTTGTATTATTAACCTTGAAGTCAGAGGTTCAATTTTCCCACTTCACATATTGTTAAAAAAAAGGTAATTAGTTAGAAATTTTGTCTGGATTTTAA 2251 38.96 MNILIEKGKPQEAQNVFDNLIAEGHRPSLVTYTTLLSALTVQKRFKCINSVIQMVEEKGMIPDSIFFNAVINAFSEAGNVEEAMLTFRKMKASGLRPGTSTFNTLIKGYGIAGKPEETVELLDLMYREENLKPNLRTCNVLVRAWCKKKKIAEAWNVVQNMVALGIKPDAVTYNTIATAHAQSGETDRAEEIIKLMQDNNIQPNQRTCSIVACGYCKEGRLKEAMRFVYKMKDLGVQPNLVLFNSLIKGFVESMDRDGVDKALMLMKEFGVKPDVITFSTVMNAWSTAGFMVKCREVFDEMVKAGIEPDAHAYSILAKGYVRSQEPEKAEELLNTMTRYGKRPNVVFFTTIISGWCSSGRMDNAIKILNNMCEYGVSPNLKTFETMIWGYGEAKQPWKAEEMLQIMEEFKVKPEKSTILLVAEAWRSIGLTKEANRIMAIMKRMETTDQIVTKNDMRAENSDKFYKKQLSGTSHTNILQIPNANAVDQKGSTTGNKRNRVLLRDVDSSLESSWLATKSIYQTRTCKFGERLPIISRKQSQAQLGMYSHFTHSCLLVTLM 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 65767907 65772510 - XM_039042539.1 Bhi09g02416 45033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02416 559 Gene3D Tetratricopeptide repeat domain 293 496 IPR011990 GO:0005515
Bhi09g02416 559 Gene3D Tetratricopeptide repeat domain 1 127 IPR011990 GO:0005515
Bhi09g02416 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Bhi09g02416 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Bhi09g02416 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 133 IPR002885 -
Bhi09g02416 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Bhi09g02416 559 Gene3D Tetratricopeptide repeat domain 207 289 IPR011990 GO:0005515
Bhi09g02416 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Bhi09g02416 559 Pfam PPR repeat 312 340 IPR002885 -
Bhi09g02416 559 Pfam PPR repeat family 62 109 IPR002885 -
Bhi09g02416 559 Pfam PPR repeat family 343 390 IPR002885 -
Bhi09g02416 559 Pfam PPR repeat family 133 180 IPR002885 -
Bhi09g02416 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Bhi09g02416 559 SUPERFAMILY HCP-like 63 410 - -
Bhi09g02416 559 Pfam Pentatricopeptide repeat domain 229 285 IPR002885 -
Bhi09g02416 559 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Bhi09g02416 559 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Bhi09g02416 559 TIGRFAM PPR: pentatricopeptide repeat domain 101 134 IPR002885 -
Bhi09g02416 559 TIGRFAM PPR: pentatricopeptide repeat domain 67 98 IPR002885 -
Bhi09g02416 559 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Bhi09g02416 559 TIGRFAM PPR: pentatricopeptide repeat domain 137 170 IPR002885 -
Bhi09g02416 559 TIGRFAM PPR: pentatricopeptide repeat domain 207 239 IPR002885 -
Bhi09g02416 559 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
Bhi09g02416 559 TIGRFAM PPR: pentatricopeptide repeat domain 348 379 IPR002885 -
Bhi09g02416 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Bhi09g02416 559 PANTHER OS01G0228400 PROTEIN 1 558 - -
Bhi09g02416 559 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 558 - -
Bhi09g02416 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Bhi09g02416 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Bhi09g02416 559 Gene3D Tetratricopeptide repeat domain 128 200 IPR011990 GO:0005515
Bhi09g02416 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02416 K17710 PTCD1; pentatricopeptide repeat domain-containing protein 1 - qsu:111987770 800.431
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02416 Bhi-Chr9:65767907 Bhi02g01464 Bhi-Chr2:40022535 1.24E-16 dispersed
Bhi09g02416 Bhi-Chr9:65767907 Bhi09g02417 Bhi-Chr9:65767907 9.87E-38 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g333 . Blo12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0612 . . Chy04g00266 . . . . . . Bpe04g00340 . . Sed13g2120 . . . . . . . . Bhi09g02416 Tan01g3776 Cmetu04g2828 . Hepe01g2116 Mch11g0654 . . . . . . . . . . . Cme04g00297
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013935 1 2 1 0 1 1 0 0 1 0 0 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 2 1 1 23