Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02438 TGGAAGAAAGCCGCGTTCCATGCGCGTCTTCTAGTTTTCTCTCTCTACTGTGTTAACTTTGGAAGCGCTCTCTCTCAAAACTCTCTTAAACTCGGCTCCTCTATTTATCCGTACCATCCTCACTTCCTTCTTCCTTCATTTTAACGCCATTTCTTCTCCTCTCTCAAGAGATTACTCTCTCTTCCAATTTCTGCTGCTTCCATTCTCGTAAATCTGGAAGACCTAATCGCCAAAAGGTTTTTCTATCATCGACAATTTTTTTGTGAAGCTTCTGAGGAGAAGCTGCTTCGTATACAACTCTGGCCGACATCGTAGTCATATCGTCTCGATCTTCCTCTAGACTTGGCCCTTTTCAGGGATTTTCTGGTTCATGGGCGCCTTTCGATTGCAGTTTCTTGTTGGTTCGGCGTCTTCCGATCGACTACGGCTAATCTCAATCCGGTCGACAATCTATTAAAAAAAGAAAAAAGAAAAAAGAAAAATCGTTACGATGTGAGCATTTGAACCATTAATTGAAGAAGGAGACGTGCTAAAACGGCCAGGTAGAAAGAATAGTTCGTGTGGAATAGGATACTAGCAGGAACAGAAACATAGAGCTCTCATTCCGAATCTTTTGAGGGATTTCTTATCTTTATAAAATTGCAGCTATGGCAAAATTCAATTGCTTCTCTGGCCGGACAGGGAAGAAGAAGAAAACCAAGAGTGATTTGGCGGAATTGCAAAAACCTGCTGAATTGAATTACTTGAAGAAAACTTTACAAGTCAGCATCCATCACTCTGAGGAGCCTTTTCAAGTTGGAGAAGGGAAGTCGTCTACTCTCGACGTTTCAATTCTGTACCCATCTGAGAATAATTCTAAGCTGGATGTTAAGGTAACGAACCATGAGAGTCCTGCAGCAGGAGTAGTAGAAGCTGCATATGAAGGGGAGGACGAGCGTGACGACAACTCTATCAAGCAGAATCTTTCCGACTTTGATCTCCCTGATCAAGATACCTGTGGAGAAGAATTTGAGTTTCAATTTTCTAGTTCAGTGGGAAAACAATTTGATAAGATTATTATTGAAGGTGAAGGTAGTGAAGGAGTAGGAGTAGGAGTAGGAGCAGGAGGAGGAGGAGGGGTTGATGCAATCCAAAGTGGGCATGTTAGTGATCCTGGAATTGGTAAGGCAGTCTGTTGGGCATCACCTAAACTTAAACGCTCCTGTTCTAATCTGGAAACCAGGGATGTGCATAGAAATTTATCTCATCAGTTGCAGCCTCCAAAGTGTCAGTCTTTCGAAAAACTGCAAGAATTGGCCGATGAAATGAGGGACTATGTTGATCCAGGCAGTCCAGGGTCTATTATGACCCATCGCAGTGCTGATAAAGTCATGTTGAAGAAGTGTTCTTCGAGCCAGATTCTTCCTTCCAGAAGTAGAAGGTTGTGGTGGAAGTTGTTCCTATGGAGCCATAGAAACCTGCAAAGGCCGTGGACAACCAAGGCTACTCCCACCAACTCCGCGTTCAACCAGCAAGGTGGGTATTGTTCTGACAGTCTTGAGCCGAACAGAGCAGTGGGAAAAGGTATGATGGAATCACCTGGATCATTTACTGAGGAAACCTGGACAAACGGCCCAAGTAACAACAAAAGCAACAATCAAGATCATGAGAATTTGTGTAATGGAGTCTCTGGTTTATGGCCACAAAATCAGTGGGTTGCATTTTCAGCAGAGTCATCTTCCCTAAGAAGAGTGGACGAGTGGGTGAAGGATCTTCAAATCGAACCGTGTGTTTCAATCGATGAGGTTGGGGGTGACAAAGATCCAGATACTTTCTTCCCACCCTCTCCTGAGAGAACTTCAACTCACATGCCCCGACGTGGAGAACCCAATCTGACAGAAGAGATTTTGTATGCCAATAGCGTCATCCAGTCGCTGAATTCTTCCTCAACCGTGGCTCACATCTCTGGTATTGGCTTAAAAGCCATACCCACAATCTCACATCTATCCGGTCTCAGATCTGTCAATTTGTCCGGCAACCTCATAGCTCACATTAACCCTGGATCACTGCCCAAGGGGCTGCACACTCTCAATTTGTCCAGGAACAAGATCAGTGCCATCGAAGGGCTCAAAGAATTAACGCGACTTCGAATACTTGATCTGAGTTACAATCGCATATCTCGGATAGGACATGGGTTGTCAAACTGTGCAATTATCAAAGAACTCTATCTAGCTGGCAACAAGATTAGTGATGTTGAGGGACTGTATCGAATCTTGAAGCTGACAGTTCTTGACCTAAGCTTTAACAAGATTTCAACAACCAAAGCTCTGGGTCAACTTGTTGCCAACTATAACTCTCTTCAAGCTCTTAATCTGTTGGGGAATCCAATTCAAAGTAATGTGAGCGACGACCAGCTACGCAAGGCGGTTGTTGGCCTTCTTCCAAACCTTGTTTACCTAAACAAGCAAGCCATCAAAGCACAGAGAGCTCGAGAAGTTGCAACCGATAGCATTGCAAAAGCTGCACTAGGAAACAGTAGTTGGAGTTCCCGTAGAAAAACATCCAGGAAAACAAGCCATATGGCATCATCTACCATTAGTGGGCACAGAAGCACTGCAAGCGTTGCACACAAAGGCAGGCACAGATCAAAAGCGCCAACCGCTCGCCATTATTCGTCGGCTCTCGCCTCATCATCTCGTTAGACTTGGCCCTTCCGCTGATATACCAAAAAGATATTCATTGGGGGAAGCGTTTTCTGTTCTGTTTTGTTTTGTTTTCCCACTTTTTCTGTTACATCACACTTGGTGTCCTGTTTTCTTTCGTCCATAGAATACGTTTGTCATGTGGTTAAAATATTCTCTTTAACCTTAGTGAATTGAGATTGCTTTTCTTAATGGCATAATCGGGTTCTTTTGCAA 2897 43.91 MAKFNCFSGRTGKKKKTKSDLAELQKPAELNYLKKTLQVSIHHSEEPFQVGEGKSSTLDVSILYPSENNSKLDVKVTNHESPAAGVVEAAYEGEDERDDNSIKQNLSDFDLPDQDTCGEEFEFQFSSSVGKQFDKIIIEGEGSEGVGVGVGAGGGGGVDAIQSGHVSDPGIGKAVCWASPKLKRSCSNLETRDVHRNLSHQLQPPKCQSFEKLQELADEMRDYVDPGSPGSIMTHRSADKVMLKKCSSSQILPSRSRRLWWKLFLWSHRNLQRPWTTKATPTNSAFNQQGGYCSDSLEPNRAVGKGMMESPGSFTEETWTNGPSNNKSNNQDHENLCNGVSGLWPQNQWVAFSAESSSLRRVDEWVKDLQIEPCVSIDEVGGDKDPDTFFPPSPERTSTHMPRRGEPNLTEEILYANSVIQSLNSSSTVAHISGIGLKAIPTISHLSGLRSVNLSGNLIAHINPGSLPKGLHTLNLSRNKISAIEGLKELTRLRILDLSYNRISRIGHGLSNCAIIKELYLAGNKISDVEGLYRILKLTVLDLSFNKISTTKALGQLVANYNSLQALNLLGNPIQSNVSDDQLRKAVVGLLPNLVYLNKQAIKAQRAREVATDSIAKAALGNSSWSSRRKTSRKTSHMASSTISGHRSTASVAHKGRHRSKAPTARHYSSALASSSR 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 66413986 66417489 + XM_039041454.1 Bhi09g02438 45055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02438 677 ProSiteProfiles Leucine-rich repeat profile. 537 558 IPR001611 GO:0005515
Bhi09g02438 677 PANTHER NISCHARIN RELATED 3 665 - -
Bhi09g02438 677 SMART LRR_typ_2 490 513 IPR003591 -
Bhi09g02438 677 SMART LRR_typ_2 446 469 IPR003591 -
Bhi09g02438 677 MobiDBLite consensus disorder prediction 313 333 - -
Bhi09g02438 677 MobiDBLite consensus disorder prediction 377 405 - -
Bhi09g02438 677 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 665 - -
Bhi09g02438 677 ProSiteProfiles Leucine-rich repeat profile. 492 514 IPR001611 GO:0005515
Bhi09g02438 677 Gene3D Ribonuclease Inhibitor 512 608 IPR032675 -
Bhi09g02438 677 MobiDBLite consensus disorder prediction 626 677 - -
Bhi09g02438 677 MobiDBLite consensus disorder prediction 1 21 - -
Bhi09g02438 677 MobiDBLite consensus disorder prediction 306 333 - -
Bhi09g02438 677 Pfam Leucine rich repeat 448 503 IPR001611 GO:0005515
Bhi09g02438 677 Pfam Leucine Rich repeat 537 549 IPR001611 GO:0005515
Bhi09g02438 677 SUPERFAMILY Outer arm dynein light chain 1 437 603 - -
Bhi09g02438 677 SMART LRR_sd22_2 490 512 - -
Bhi09g02438 677 SMART LRR_sd22_2 513 534 - -
Bhi09g02438 677 SMART LRR_sd22_2 468 489 - -
Bhi09g02438 677 SMART LRR_sd22_2 535 556 - -
Bhi09g02438 677 ProSiteProfiles Leucine-rich repeat profile. 470 491 IPR001611 GO:0005515
Bhi09g02438 677 Gene3D Ribonuclease Inhibitor 394 511 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02438 - - - csv:101212929 1126.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00167 Bhi-Chr2:2999116 Bhi09g02438 Bhi-Chr9:66413986 3.15E-08 dispersed
Bhi02g00168 Bhi-Chr2:2999806 Bhi09g02438 Bhi-Chr9:66413986 7.67E-08 dispersed
Bhi05g01805 Bhi-Chr5:57234205 Bhi09g02438 Bhi-Chr9:66413986 7.45E-76 dispersed
Bhi05g01806 Bhi-Chr5:57234485 Bhi09g02438 Bhi-Chr9:66413986 9.40E-76 dispersed
Bhi09g02438 Bhi-Chr9:66413986 Bhi01g03515 Bhi-Chr1:89016455 2.32E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34