Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02528 CGTGATCTGGTTGGGCCACGTGTCCTCGTAATTATGTGGTCTTTCCACACTGGAAAAAAACCCAGAGAGGCTTCAATACATGGACGCAGCAGATCCCTTTCCATAAATGGCGCTGTGCAGCTGAATGATGTGAATCCGCTTCAGTACAACGCTCCGTAAAAAAGCGCTAATTCTGTTTGATCTCACTTTGCCTGACTCCAACCAGCACCGCACTCATCCGCAAAGAAAGAATCGAGTTGCGGATCTAAGTATGGGGAGAGGCAAGATTGTAATTAGGAGAATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGTAGGAGCGGATTGCTGAAGAAGGCGAAAGAACTAGCAATTCTTTGCGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACGAGCAAGCTCTATGAATACTCCAGCACCAGCATGAAAACACTAATAGAACGATATAACAAAACAAAAGATGAGCACCATCAGCTTGGGATCTCGACTTCTGAAGTCAAGTACTGGCAAAGGGAAGCAGCAACATTACGGCAGCAACTGCAGAGCTTACATGAAAATCACCGGCAGATGATGGGTGAAGAGCTGACTGGTCTGAGCGTCAAAGACCTACAGAATCTAGAAAATCAATTGGAGATAAGTCTCCATGGTGTCCGTATGAAGAAGGATCAAATCTTAGTGGATGAGATACAAGAACTAACCAGAAAGGGAAACTTTATTCACCAAAACAATATGGAACTTTATGAGAAGGTAACCCTAATTCGTCAAGAAAACCAGGAATTACACAAAAAGGTTTATGGAACGAAGGATGCCAATGGAGCACACATAAGCAGTCTTACAAATGGACTTGGTGTTGGAGAGGATGCAGGCATACCTATCAACCTTCAACTCAGCCAGCCACAGCAACAAGACAATGAGGCACCAGAAAGAGCTACAAAATTGGGACTACAACTACGCTAGCAAAAAGAGACCTTACACCAACCAGGAAGATATTTCTTATTTTGCATCAAGATAACGGTGTAAGGTTGCAAATTATCTTTCAATCAGTGAAATGTGGTAGAGTAACACACTTTTCCATACCGAAAGAAACCACCTTTGTCTAGTTTGTGGTGATTTAAACAAGGCTATTTATGTGACAAGAAGGCTATGCAAAAAACAAAAAATAATTAAAA 1179 42.75 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSMKTLIERYNKTKDEHHQLGISTSEVKYWQREAATLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLHGVRMKKDQILVDEIQELTRKGNFIHQNNMELYEKVTLIRQENQELHKKVYGTKDANGAHISSLTNGLGVGEDAGIPINLQLSQPQQQDNEAPERATKLGLQLR 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 68307217 68326611 + XM_039043044.1 Bhi09g02528 45145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02528 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi09g02528 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi09g02528 238 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Bhi09g02528 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 234 - -
Bhi09g02528 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi09g02528 238 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bhi09g02528 238 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Bhi09g02528 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi09g02528 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi09g02528 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi09g02528 238 Coils Coil 86 113 - -
Bhi09g02528 238 MobiDBLite consensus disorder prediction 218 238 - -
Bhi09g02528 238 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi09g02528 238 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi09g02528 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi09g02528 238 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02526 Bhi-Chr9:68307204 Bhi09g02528 Bhi-Chr9:68307217 1.72E-161 dispersed
Bhi09g02528 Bhi-Chr9:68307217 Bhi11g01062 Bhi-Chr11:31391637 4.17E-103 dispersed
Bhi09g02527 Bhi-Chr9:68307216 Bhi09g02528 Bhi-Chr9:68307217 9.99E-176 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1963 PF01486 K-box 3.00E-26 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02528 K09264 - csv:101203545 432.18