Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02548 CAAAAAACCCACTGGTTTTATTTTCTGGAATTTGAAAGTGTTTTTAGGGATTTCGCAACTCTTTTGCACTCCTCGGAGCTCAAAACCGGACAGCGTCTCGCCGGTATTTCCATTGAAGGCGGTGGTCGTCGACCTAGAATCACATAATAACCCTGCAACTATGCAATTGGAGCCAGTGCACTTGAGGGTATTCTAGTACAGGACGCTTCAAAGTTGTTATCGGTTTATTAATTTGGAAAGTTTATCCGTGTTAGTAGCAGGAATGTCTGCTCCATTGACTCCCTCAAAGCGATCACGTGATCGAACCTTTGTCAAGTCTAATGGGAAAGGAAAATGGCAAAAGTCATCAGGTTCTCGTTCGCAAAATCGATCCTTCAAATTGTCTCCTGGCTATGCTGTTTTTCGTGTTCTCTTTCCTGTTTCCAGAATTGGTAGCCTTGTAGGTAGAGATGGGGACGGTCTATCTAAAATTCGTGAAGAAACAGGTGTAGAAATCAGAGTAGAGGACACTGTCCCTGGATGTGACGAGAGGGTAGTAGTAATTGGAGATTCTAAGCAAGACACTGAAGTGAACCCTGAGCAAAAGAGTAAGGAAGACAACAAAAATTCTGAAGTCGAAGAGAATGATGGTGATATTGCCAAGTTGAAAAATAAGGAAGATAAAGATTCTCCTCCTGTGGAAGATGCTAAACAGAAGGAGGTTTCTCATTTGCAATTGCGAAAAGCCCTCTTTCTTGTTTCTGAGAAAATCTTTGATGAAGAACCGGAGGCAGATGGGACCGACGTTGAGGGTGATAAGCTGCCTACATTTGTTTTAAGATTGCTAGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAGTCAAACAAATGTCATCTGATAGTGGAGCTCAAATTAGAATTCTTCCCAGGGATAAACTTCCTCCTTTTGCGACAACCAATGATGAGCTAGTCCAGATTAGTGGAGGAATTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATAGAAAATTCACCCAATGATAAAGATCCTGTCGCCTCAAGCAATGCTGCACAGTCATCGCATTCTTCTGGACAGTCTCTCTCTAGGGCTCGTGAATCTCCTCTGGGTAGTGGTTCTTTTAGTACTCATGGAGGCCCTTACTCTGTGCCTCGTGATGTTGGCAATTTTCATTCTAGTGCTCCTTCTCTTGCTCCCAAACAGTATGAAACCAGTATTCCTGGTCGAAGCAAACCTTCTCATGAAATTTTAAGTTATCGTTTATTATGCCCAACTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGAGCAGTAGTAAAGACTCTTCAGCAAGACACGGGCTGTGACATCAAAGTCGTTGAAGGTGCCGTGGACTCAGAAGACCGCATTATACTTGTAGCTGGTCCTGCGCATCCAGATGACAGAATATCACCAGTGCAAGATGCTGTTTTTCGTGTTCAGGCCAGAATTGTCAAGGCTATACCAGACAGCAAGGAGCAAAACTTGGTAGCTAGGTTTCTTGTTTCCTCCAATCAAATTGGTTGTCTTCTTGGGAAGGGTGGCTCCATCATAGCTGAAATGAGAAAATCGACTGGTGCATATATCCGTATTTTAGGAAAGGAGCAGATTCCAAAGTGTGCTGGGGAAGATGAAGAAGTGGTTCAGATAAATGGAGAGCCTGAAACCGTTCAAGATGCCATGTTGCAGATTACTACTCGGTTGAGGCATCATTTTTTCCGTGATGCATTTCCATCAGTTAATAGTCATTCGAATCCTGCATTTATGGATAGAATTCCTTCATTTCCTTCATATTTTGGAAGGAGGGAATTATCACCTCCAGGAATCTATTCAAGTTTAGGCCCTTCATTTCACAAGTTTGATGCTCTTAGTGGCATTTCTTCACTTGGAGATCTGCGGGATGATCGACCTCCTTTTCTTCATAGGCCAGGTGCTCCTCTGTTATCTGACAGAAAACCATGGAGCTCTCAGGGATTAGTTGAAGGTGGTGTTGGCTTGTCAGATTTTGCAGGAGCCCATCATAGAAGAGTTGCTGGATTTGGAGGAGGAAATAATCCAGCTATTATTACAAGCACCACTGTTGAAGTAGTTGTTCCTCGAAACATTGTCCCCGTTATTTGTGGAGAAAATGGTGAATGTTTGAAACAGATTCGTCAGATTTCTGATGCAAAAATTACAATTACCGAGCCAAAGCAAGGAGAAGTTGAAACTGTGATTATAATTTCTGGAACGCCTGAGCAGACCCATGCTGCCCAGAGTCTTATTCAAGCTTTTGTAATCAGCGAGACCGAGTCTAGTTGATTTTTTATATTCAGATACGATGACTACTTGCTTATCTCTATGCCCCGATGTTTTGGAGAAAAGATGTTGTACGCGGAAGAGTATTCACTGCTGATACACTTTGGGGCAGTTAGTTTTTGCCATAATCTGGAAAATTTGTCAAACGCTCAGGAGCTGCAGTCTATAATATCTGAAGTTTATGGCCTTGTGACATTTTTCATATCTATATGTAAACACAGCCTAATGATGGCCATATTTTTTTGTGAAACTTGTGAGCATTTGAAAATTGTGATTCCCCGGCTGCAAAAGATGTACTTAGGGGTTCCGAAAAGAAAAAAGAAAGTATATTTAAGAGGACCAGAATAGTAGTTGCACAAGGATATTTTTATTGAGAAATTGCATTGTTTCTTTTTTCA 2739 41.88 MSAPLTPSKRSRDRTFVKSNGKGKWQKSSGSRSQNRSFKLSPGYAVFRVLFPVSRIGSLVGRDGDGLSKIREETGVEIRVEDTVPGCDERVVVIGDSKQDTEVNPEQKSKEDNKNSEVEENDGDIAKLKNKEDKDSPPVEDAKQKEVSHLQLRKALFLVSEKIFDEEPEADGTDVEGDKLPTFVLRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPPFATTNDELVQISGGIDVVKKALELVFQQLIENSPNDKDPVASSNAAQSSHSSGQSLSRARESPLGSGSFSTHGGPYSVPRDVGNFHSSAPSLAPKQYETSIPGRSKPSHEILSYRLLCPTERVGNVIGKGGAVVKTLQQDTGCDIKVVEGAVDSEDRIILVAGPAHPDDRISPVQDAVFRVQARIVKAIPDSKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQINGEPETVQDAMLQITTRLRHHFFRDAFPSVNSHSNPAFMDRIPSFPSYFGRRELSPPGIYSSLGPSFHKFDALSGISSLGDLRDDRPPFLHRPGAPLLSDRKPWSSQGLVEGGVGLSDFAGAHHRRVAGFGGGNNPAIITSTTVEVVVPRNIVPVICGENGECLKQIRQISDAKITITEPKQGEVETVIIISGTPEQTHAAQSLIQAFVISETESS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 69353328 69358542 - XM_039040821.1 Bhi09g02548 45165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02548 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 615 688 IPR036612 GO:0003723
Bhi09g02548 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 40 95 IPR036612 GO:0003723
Bhi09g02548 693 ProSiteProfiles Type-1 KH domain profile. 44 94 - -
Bhi09g02548 693 MobiDBLite consensus disorder prediction 261 299 - -
Bhi09g02548 693 MobiDBLite consensus disorder prediction 1 38 - -
Bhi09g02548 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 417 501 IPR036612 GO:0003723
Bhi09g02548 693 ProSiteProfiles Type-1 KH domain profile. 182 251 - -
Bhi09g02548 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 172 257 IPR036612 GO:0003723
Bhi09g02548 693 ProSiteProfiles Type-1 KH domain profile. 337 404 - -
Bhi09g02548 693 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 337 423 IPR036612 GO:0003723
Bhi09g02548 693 MobiDBLite consensus disorder prediction 261 330 - -
Bhi09g02548 693 Gene3D K Homology domain, type 1 419 499 IPR036612 GO:0003723
Bhi09g02548 693 Gene3D K Homology domain, type 1 181 259 IPR036612 GO:0003723
Bhi09g02548 693 Gene3D K Homology domain, type 1 44 104 IPR036612 GO:0003723
Bhi09g02548 693 SMART kh_6 181 256 IPR004087 GO:0003676
Bhi09g02548 693 SMART kh_6 421 496 IPR004087 GO:0003676
Bhi09g02548 693 SMART kh_6 43 113 IPR004087 GO:0003676
Bhi09g02548 693 SMART kh_6 336 416 IPR004087 GO:0003676
Bhi09g02548 693 SMART kh_6 617 687 IPR004087 GO:0003676
Bhi09g02548 693 CDD PCBP_like_KH 184 252 - -
Bhi09g02548 693 ProSiteProfiles Type-1 KH domain profile. 422 491 - -
Bhi09g02548 693 ProSiteProfiles Type-1 KH domain profile. 618 682 - -
Bhi09g02548 693 CDD KH-I 620 683 - -
Bhi09g02548 693 CDD PCBP_like_KH 339 408 - -
Bhi09g02548 693 CDD PCBP_like_KH 424 492 - -
Bhi09g02548 693 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 558 - -
Bhi09g02548 693 MobiDBLite consensus disorder prediction 21 38 - -
Bhi09g02548 693 MobiDBLite consensus disorder prediction 94 147 - -
Bhi09g02548 693 Pfam KH domain 340 390 IPR004088 GO:0003723
Bhi09g02548 693 Pfam KH domain 620 683 IPR004088 GO:0003723
Bhi09g02548 693 Pfam KH domain 47 99 IPR004088 GO:0003723
Bhi09g02548 693 Pfam KH domain 185 251 IPR004088 GO:0003723
Bhi09g02548 693 Pfam KH domain 425 491 IPR004088 GO:0003723
Bhi09g02548 693 Gene3D K Homology domain, type 1 337 414 IPR036612 GO:0003723
Bhi09g02548 693 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 1 558 - -
Bhi09g02548 693 Gene3D K Homology domain, type 1 616 689 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02548 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101221201 1262.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01505 Bhi-Chr1:30824139 Bhi09g02548 Bhi-Chr9:69353328 2.97E-71 dispersed
Bhi06g00384 Bhi-Chr6:8232268 Bhi09g02548 Bhi-Chr9:69353328 2.83E-72 dispersed
Bhi06g01210 Bhi-Chr6:35344305 Bhi09g02548 Bhi-Chr9:69353328 1.38E-16 dispersed
Bhi09g00223 Bhi-Chr9:4906955 Bhi09g02548 Bhi-Chr9:69353328 1.06E-78 dispersed
Bhi09g02548 Bhi-Chr9:69353328 Bhi12g02186 Bhi-Chr12:70104868 3.28E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35