Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02574 ATAATAAAATAAAAAAAAAATAGGAATAAATTTGAGGAATAGAGAATGGGAGGGAAGGACCTTATCCACTGCGGGAAGAAGAGTGTTTGCCTAGGGATTGATTTGAGTCGGAAGGACCCCGCTTAACAGCATCACCCTTCACTTCTAGATGTCTGCCACGTGTTATGATGGCCGACAGTTTAAACATCACCTTCCATTCAGGTAATTTTTAACGTACGTACTTCCTTTTTTTCCCCCTCAAATGGTAATTACACTCAGACCCATGCATGCAATACATTTTTCTCTTCTTCTTTTTTTTTATCATGCACCAAAACGACGTCGGTTATGCGACTAATGCAATTTCATTTCATCCCCTACTACTCGATTTCATTCTTCAGCATCTTTGGCACGTGCCTCCTTTGTTTTTTTACCCGTCACTACATTAATCCAAAGTCAAACACACGGCATTTTCTTTGAATCCCAACGGACCTTAAAACAACTTACTTCATCCCCATTCTTTCCATTTAATTAATCTCTCATTTTTCCCACTTTTTTACCTTCTTTTTTCCCCCTTCCTTTTTCCTGTGGGTATATACATTTTGATTTATCTCTATCCATTTTAGCTGTCTTCCTGTCTCCTTTGGATGCAAATTAAAAAATTAAAAAAAAGGGGAAAAAAAAAAAGGAAAGAAAAAAAGTTATCTCTATCTTTCTCTCTCATCTTACATAGCCATAACTCCTTCACACTTCACTCTCGGCCACTCTCTCATTTTCCTCTCTCTCACTTTTTTCTCCTTCTCAATCGCTACTTTCCTCACTATTTCCCATTCACAAACCCTCAATTTTTGCCCACACACATTAACTCTAATGGAAGGACCCGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCCCTACCGAAAACCGCCAGTCCTCAGACGCAAATAAAACCACCGTCGTCCCATCCTCCGCCGCTGCTGCTACTGCCGACCATTTCATCGTCGAGGATCTTTTAGACTTCTCTAATGACGACGACGTTGTCTTCACCGACGGAACTTTCGACAACCAAACCCCTACCTCTACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTCGAACAACACAACAATGGCCACAACTATAATTTCGCAGACGCCAATTTCTCCACCGACCTCGGTGTGCCGTACGATGACTTGGCTGAGCTCGAATGGCTTTCCAATTTCGTGGAAGATTCTTTCTCAGCTGACGACTTGGAGAAGCTGAGTTTGATATCCGGGATGAATTCCCGGACCGACCATGAGGATGACGCCTCAAAAACTCGAGAATTCCAGACCGGATTGAACCGGAACCACTCACCCGGACTCTCCGTACCGGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCAGATTATCCGTACTCTCCCCCACAAATTCCTCCTCAGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCTAAGAAAACCGCCAAGAAGAAAGAAACCCCGGATGACACGTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGCCCAAAGACGTTGTGTAATGCTTGTGGGGTTCGGTACAAGTCTGGCCGCCTGGTACCGGAATACCGACCAGCGGCGAGCCCCACGTTCGTACTGACGAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGGCGGCAAAAAGAGATGATGAGAGCACAGCAACAACAACAGTATCTTCATCATGAGAGTATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAACACATAGGGCCCCTCTACCAATAGCTCCCTCCATCAAAAATCCAACGCCATCCGTTGATTTCCTTCAAGTTTCCTGACAATTAGAGAAAAAAAGAGAGAAAATGTTTTTGAATTTAGTGGGCTAATTATATTTCAAAATCTGATTTAGAGTCACTTTACTTGAGTTAATTTTTAGATTCAATTTCTAACAATCAACTTAAATTTTGAATTTAGCATACTGATAATCACTTTTCTTAAA 2107 44.0 MEGPEYFQPGFCSQFPTENRQSSDANKTTVVPSSAAAATADHFIVEDLLDFSNDDDVVFTDGTFDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNGHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSADDLEKLSLISGMNSRTDHEDDASKTREFQTGLNRNHSPGLSVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTAKKKETPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQQQQQYLHHESMGFDHVSNDDDYLIHQHIGPLYQ 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 69908601 69910823 + XM_039042061.1 Bhi09g02574 45191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02574 348 Pfam GATA zinc finger 244 277 IPR000679 GO:0006355|GO:0043565
Bhi09g02574 348 SMART GATA_3 238 288 IPR000679 GO:0006355|GO:0043565
Bhi09g02574 348 ProSiteProfiles GATA-type zinc finger domain profile. 238 274 IPR000679 GO:0006355|GO:0043565
Bhi09g02574 348 MobiDBLite consensus disorder prediction 146 176 - -
Bhi09g02574 348 PANTHER GATA TRANSCRIPTION FACTOR 2 347 - -
Bhi09g02574 348 MobiDBLite consensus disorder prediction 215 241 - -
Bhi09g02574 348 MobiDBLite consensus disorder prediction 12 27 - -
Bhi09g02574 348 PANTHER GATA TRANSCRIPTION FACTOR 2 347 - -
Bhi09g02574 348 PIRSF Txn_fac_GATA_plant 24 334 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bhi09g02574 348 ProSitePatterns GATA-type zinc finger domain. 244 269 IPR000679 GO:0006355|GO:0043565
Bhi09g02574 348 MobiDBLite consensus disorder prediction 1 27 - -
Bhi09g02574 348 CDD ZnF_GATA 243 290 IPR000679 GO:0006355|GO:0043565
Bhi09g02574 348 Gene3D - 239 323 IPR013088 GO:0006355|GO:0008270
Bhi09g02574 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 239 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02574 - - - csv:101221905 582.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00857 Bhi-Chr7:29344117 Bhi09g02574 Bhi-Chr9:69908601 1.02E-46 dispersed
Bhi07g00858 Bhi-Chr7:29344118 Bhi09g02574 Bhi-Chr9:69908601 1.02E-46 dispersed
Bhi09g02574 Bhi-Chr9:69908601 Bhi10g01941 Bhi-Chr10:48383774 8.99E-36 dispersed
Bhi10g00368 Bhi-Chr10:8516729 Bhi09g02574 Bhi-Chr9:69908601 2.16E-10 dispersed
Bhi01g03395 Bhi-Chr1:85724079 Bhi09g02574 Bhi-Chr9:69908601 3.05E-89 transposed
Bhi04g01380 Bhi-Chr4:34644633 Bhi09g02574 Bhi-Chr9:69908601 5.52E-51 transposed
Bhi09g00450 Bhi-Chr9:9668213 Bhi09g02574 Bhi-Chr9:69908601 7.09E-93 transposed
Bhi12g01551 Bhi-Chr12:50415775 Bhi09g02574 Bhi-Chr9:69908601 1.68E-38 transposed
Bhi04g00868 Bhi-Chr4:21889062 Bhi09g02574 Bhi-Chr9:69908601 3.21E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g279 Blo01g01777 . . Bda03g00433 . . Bma04g00410 . Cmo05g00609 Cmo12g00198 . . Car09g00560 Car12g00226 . Cpe07g00206 Cpe06g00489 . . . . . . . . . . . . . . . . . . Lsi04g02328 Csa03g04547 Chy04g00155 Cme03g01757 . . . . . . . . Sed02g0905 . Cmo09g00615 Cma09g00633 Cma12g00243 . . Cpe11g00511 . Bhi09g02574 Tan01g3930 Cmetu04g2325 . Hepe01g2218 Mch11g0766 . . . . . . . . Lsi08g01074 Csa02g02256 Chy03g01261 Cme04g00180
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1967 PF00320 GATA 3.20E-15 CL0167 Bhi TF