Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02581 ATAAAGTGGCAGGAAACATGTTGTTCACGTCACATAGAGACCTAAGAATCCGAGTATGGAATTTCACAGTTTCAGAAAAATTGAGTTGGAAAAAGGTTTGTTGTATTCCAAAGAAAAGCTCTTTGCTGTCATTGTCCAAAACCAAAAGAGAAGCAAGCAGCCACAAAGACACCATATCTTGCATTGCATATTACCTCTCACAAGACCTCCTCTACACCGCCTCTCACGACAAAACCGTCAAAGTCTGGCGAATCTCTGACCGCAAATGCGTTGACTCTTTTCTCGCCCATGAACACAAAGTCAACTCCTTAACCGTCAACCAAAACGACGGCTGCCTCTTCACTTGCTCCTCAGACGCAACTGTCAAGATTTGGCGAAGGCTATTCCCAGAAAACTCCCACACCCTTACGATGACACTCAAGTTCCAGGCTTCCCCTGTAAACGCCGTCGTTTTGAGCATACACCACGACGCCACTTTCCTCTACTCCGGATCCTCCGATGGGACCATTAACTTTTGGGAAAAGGAGAAGGTTTCTTATAGATATAACCATGGGGGGTTCCTGCAAGGCCACCGATTTGGGGTTCTGTGTCTGGCGGTGGTGGAGATGCTGGTTATGAGTGGCTCTGAGGACACCACCGTCAGGATATGGAGGAGGGAGGAAGGGGGTTGGTCTCATGAGTGCTTGGCAGTGCTGGATGGCCATAGAGGGCCTGTCAGATGCCTGGCAGGAACCTTGGAGACCGTGCAAAACAGAGTAATGAACAAGATGGAGACCATGGAAAACAGAGTAATGGAGAACAGATTAATGAACAAGATGGAGACGAATGTTTTGGTTTATAGTGGGAGTTTGGATCAGACTTTTAAGGTGTGGAGAGTGAAGGTGTATTTGGGTCATAATGATCAATACCAAAAGGAATTACTGGAGTATGAGGAGGAGGAGGAGGATGAGAACTTGAAGATGAAGAAGCTCTATGAGATGAGCCCTGTCTTGTCTCCTTCTTGGGTTCAGAAAAAGCTTCAACCTAAATATTTCTGACTTCCTCATTCAAAATTGTAAATTTAATTGCTATGATC 1075 45.67 MLFTSHRDLRIRVWNFTVSEKLSWKKVCCIPKKSSLLSLSKTKREASSHKDTISCIAYYLSQDLLYTASHDKTVKVWRISDRKCVDSFLAHEHKVNSLTVNQNDGCLFTCSSDATVKIWRRLFPENSHTLTMTLKFQASPVNAVVLSIHHDATFLYSGSSDGTINFWEKEKVSYRYNHGGFLQGHRFGVLCLAVVEMLVMSGSEDTTVRIWRREEGGWSHECLAVLDGHRGPVRCLAGTLETVQNRVMNKMETMENRVMENRLMNKMETNVLVYSGSLDQTFKVWRVKVYLGHNDQYQKELLEYEEEEEDENLKMKKLYEMSPVLSPSWVQKKLQPKYF 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 70196486 70197560 + XM_039041345.1 Bhi09g02581 45198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02581 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 88 119 IPR001680 GO:0005515
Bhi09g02581 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Bhi09g02581 339 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 266 333 IPR045182 -
Bhi09g02581 339 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 242 IPR045182 -
Bhi09g02581 339 SMART WD40_4 81 120 IPR001680 GO:0005515
Bhi09g02581 339 SMART WD40_4 39 78 IPR001680 GO:0005515
Bhi09g02581 339 SMART WD40_4 127 168 IPR001680 GO:0005515
Bhi09g02581 339 SMART WD40_4 175 212 IPR001680 GO:0005515
Bhi09g02581 339 SMART WD40_4 219 286 IPR001680 GO:0005515
Bhi09g02581 339 Coils Coil 287 321 - -
Bhi09g02581 339 Pfam WD domain, G-beta repeat 132 167 IPR001680 GO:0005515
Bhi09g02581 339 Pfam WD domain, G-beta repeat 47 77 IPR001680 GO:0005515
Bhi09g02581 339 Pfam WD domain, G-beta repeat 83 119 IPR001680 GO:0005515
Bhi09g02581 339 Pfam WD domain, G-beta repeat 181 211 IPR001680 GO:0005515
Bhi09g02581 339 Pfam WD domain, G-beta repeat 221 285 IPR001680 GO:0005515
Bhi09g02581 339 Gene3D - 1 321 IPR015943 GO:0005515
Bhi09g02581 339 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 80 - -
Bhi09g02581 339 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 88 119 - -
Bhi09g02581 339 PRINTS G protein beta WD-40 repeat signature 65 79 IPR020472 -
Bhi09g02581 339 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Bhi09g02581 339 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Bhi09g02581 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 168 IPR001680 GO:0005515
Bhi09g02581 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 211 IPR001680 GO:0005515
Bhi09g02581 339 SUPERFAMILY WD40 repeat-like 2 287 IPR036322 GO:0005515
Bhi09g02581 339 PANTHER OS01G0232200 PROTEIN 1 242 - -
Bhi09g02581 339 PANTHER OS01G0232200 PROTEIN 266 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02581 - - - bhj:120085391 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03401 Bhi-Chr1:85874352 Bhi09g02581 Bhi-Chr9:70196486 1.76E-106 dispersed
Bhi09g02581 Bhi-Chr9:70196486 Bhi10g02212 Bhi-Chr10:56769148 1.60E-09 dispersed
Bhi09g02581 Bhi-Chr9:70196486 Bhi07g01834 Bhi-Chr7:49745524 1.55E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g302 Blo01g01774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed12g1397 Cmo01g01485 . . . . . . . Bhi09g02581 Tan01g3936 Cmetu04g0169 . . Mch11g0772 . . . . . . . . . . . Cme04g00175
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004018 2 2 2 1 0 1 0 2 1 3 1 1 1 2 3 2 1 2 1 1 1 2 1 2 0 0 2 1 2 1 41