Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02703 GAGAAGAAAAGCCAAAGCTGTGAGTCACAGAAGCAAACGCAAAGGAAAGAGAGGAGAGAGAGAGGAAGTTAGAGAGAGAGAGAGAGAAGAAGAGCCCTATTTCTCTCTCCTCTTCTTCCCCAATGCTTTCAATTTCGTAGCATAACAACAATCAACGACCCCACAATTTTCTCTTTTCTGATTTCCTTCAACAATGCCACCTTCCCCTTCCTTCCCATCTGGGTCTCGTGGAAAATGGCGGAAAAAGAAGAGGGATTCGCAAATTGGCCGCAGAAACAACTATAATAGCAACGGTACCAACAGACATGATGACGACGATGAAGATGAAGACCTTGTTGCTGCTGAAAATGAGGAAATGGAACGCGATAACAACGATGATTCTGAGGACCCTCAGATTAGTCTTCACCCCGCGCCAAATTCCGCCATTCAGGAGACTGAACTTCTGTCGGATGATAAAGTGCGAGTCTCTGAGTTTCCTCAGGTCGTTAAGCGGGCTGTCACTCGGCCTCACTCTTCTGTGATGGCCGTTGTGGCAATGGAGAGGACAAATCAGTACGGAGAGAGTAAGGGCATGCCTGGAAATTCCTTGATTTTGGAGAATGTGTCTTATGGGCAACTCCAGGCACTGTCTGCTATGCCGGCGGATAGTCCGGCTTTGCTGGATCAGGAGAGGGCGGAGGCTGGGAATGCTGCGTATGTTGTAACTCCACCGCCGATTATGGAAGGGCGTGGCGTGGTTAAGACGTTTGGGAGTAGGGTGCATGTTGTCCCTATGCACTCAGATTGGTTTTCACCCGCCACGGTGCATCGACTTGAGAGACAAGTTGTTCCACATTTTTTCTCTGGGAAATTGCCTGACCGCACTCCTGAAAAGTATATGGAGATTCGAAATTTTGTTGTTGCCAAATACATGGAGAATCCTGAGAAAAGGGTCACAGTTTCAGACTGCCAAGGGTTGGTTGATGGTGTCAGTAATGATGATTTAACTCGAATTGTTCGATTTCTTGATCATTGGGGTATTATTAATTATTGTGCTCCTACACCTAGCTGTGAAGCATGGAATAGCAGTTCATACTTGAGAGAAGATATGAACGGTGAGATTCATGTGCCATCAGCTGCTTTGAAGCCTATTGATAGCTTGGTCAAATTTGACAAACCAAAGTGTAGGCTCAAGGCAGCTGATGTATATTCGGCACTTCCATGCCACGATGACATTGATGGTTTGTCTGATTTGGATAACAGAATTCGAGAGCGTCTAGCTGAAAATCATTGTAGCTCTTGTTCTCTGTCTGTTCCCATTGCGTACTACCAATCACAGAAGGAGGTTGATGTTTTGCTTTGCTCTGATTGCTTCCATGAAGGCAAATACGTTGCTGGCCATTCAAGCATTGATTTTCTGAGGGTGGACATGGCGAAAGATTATGAACTAGATAGTGAAAATTGGACCGATCAAGAAACTCTATTGCTTTTAGAGGCAATAGAATTGTATAATGAGAATTGGAATGAAATTACTGAACACGTTGGGTCCAAGTCTAAAGCTCAATGCATTATACATTTTCTTCGTCTATCAGTGGAGGATGGCCTTCTAGAAAATGTTGATGTGCCTGGGGTTTCTCTCTCGTCAAATTCGTCACATGGAGAAGATAAGGAGAAGTCACGTTCAAATATGAACGGGAACATGGCAGGATCCTCCTCTCAAGATAATAAAGAGATACATGATAGGCTCCCCTTTGCCAATTCTGGGAACCCAGTCATGGCGTTGGTTGCTTTCCTCGCATCTGCTATTGGACCAAGAGTTGCTGCATCTTGTGCTCATGCATCCTTAGCTGCATTATCTGAGGACAGTGTAGCTTCCTCCGGGAGCATCTTTCAAATGGAAGGTTCTGTAAATGCTAATAGGACGAATGTGGACGTCAAACAAATCAGAGATGGTGGCTCCCATGGAGAACTTCCAAATTCAGATAAAAAAGATGAGAACAAGGCAGAGACAGAAGCAACAGTATTATCTTCTGAAAGAGTTAAAGATGCAGCAAAAGCAGGCCTTGCTGCCGCTGCAACAAAGGCAAAATTGTTTGCTGATCATGAAGAACGAGAAATCCAACGATTATCTGCTAATATTATAAATCATCAGTTAAAAAGACTGGAGCTGAAGCTGAAGCAGTTTGCAGAAGTAGAAACCTTCTTGATGAAGGAATGCGAACAAGTTGAGAGGACAAGGCAGAGGTTTGTCGCAGAGCGAGCAAGAATGTTAGGTGTCCAATTTGGACCTGCTGGAGTTACGCCACCTGTGAGTTTACCAGGCGTTATCCCTTCGATGGTAGTAAACAACAGTAACACAAACAGTAGGCCGAATATGATCTCACCTCCAGCTTCACAGCCGAGCGTTTCGGGGTATAGCAACAACCAACCACTTCACCCCCACATGTCATACATGCCCCGACAACCAATGTTTGGTTTGGGACAAAGGCTACCCTTATCGGCAATTCAGCAGCAGCCGCCGCCGCCCTCAACTTCTTCTAATGCCATGTTTAATGGTCCAAGCAATGCACAACCTTCTCTCAGTCACCCAATGATGAGGCCAGTTACTGGATCCAGCTCTGGATTAGGCTGAATTTGGAAGAAAGTTTATTGAATTAATTGATTTCCTTTGAAGGTTGATGATTTGTGCAACCATGAAAAGAAAGAGGGGCAGGTAAAAGAAAAATGATAATGTTCCATGAGAGAGTTGTTCATCTGTCTAACCTTTCTTTTTTGGGAGCAAAGAGAAGGGAAATTAACCTGAGGCAATAGTAGGGATTGTAATTGCATTCAATTAGATGTAAAAAAGGCAAAAAGGAGAAAGTTGTTTAAGTAAAAAAAACCATTTATGGAAGTGCTTACATTCTTCTATTTCTTGGTATTTTA 2904 43.97 MPPSPSFPSGSRGKWRKKKRDSQIGRRNNYNSNGTNRHDDDDEDEDLVAAENEEMERDNNDDSEDPQISLHPAPNSAIQETELLSDDKVRVSEFPQVVKRAVTRPHSSVMAVVAMERTNQYGESKGMPGNSLILENVSYGQLQALSAMPADSPALLDQERAEAGNAAYVVTPPPIMEGRGVVKTFGSRVHVVPMHSDWFSPATVHRLERQVVPHFFSGKLPDRTPEKYMEIRNFVVAKYMENPEKRVTVSDCQGLVDGVSNDDLTRIVRFLDHWGIINYCAPTPSCEAWNSSSYLREDMNGEIHVPSAALKPIDSLVKFDKPKCRLKAADVYSALPCHDDIDGLSDLDNRIRERLAENHCSSCSLSVPIAYYQSQKEVDVLLCSDCFHEGKYVAGHSSIDFLRVDMAKDYELDSENWTDQETLLLLEAIELYNENWNEITEHVGSKSKAQCIIHFLRLSVEDGLLENVDVPGVSLSSNSSHGEDKEKSRSNMNGNMAGSSSQDNKEIHDRLPFANSGNPVMALVAFLASAIGPRVAASCAHASLAALSEDSVASSGSIFQMEGSVNANRTNVDVKQIRDGGSHGELPNSDKKDENKAETEATVLSSERVKDAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTRQRFVAERARMLGVQFGPAGVTPPVSLPGVIPSMVVNNSNTNSRPNMISPPASQPSVSGYSNNQPLHPHMSYMPRQPMFGLGQRLPLSAIQQQPPPPSTSSNAMFNGPSNAQPSLSHPMMRPVTGSSSGLG 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72487120 72493757 + XM_039041701.1 Bhi09g02703 45320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02703 805 MobiDBLite consensus disorder prediction 715 743 - -
Bhi09g02703 805 Coils Coil 628 648 - -
Bhi09g02703 805 Pfam Myb-like DNA-binding domain 415 457 IPR001005 -
Bhi09g02703 805 MobiDBLite consensus disorder prediction 475 504 - -
Bhi09g02703 805 MobiDBLite consensus disorder prediction 715 805 - -
Bhi09g02703 805 CDD SANT 416 458 IPR001005 -
Bhi09g02703 805 Pfam SWIRM domain 193 279 IPR007526 GO:0005515
Bhi09g02703 805 MobiDBLite consensus disorder prediction 1 75 - -
Bhi09g02703 805 Gene3D - 413 463 - -
Bhi09g02703 805 ProSiteProfiles SANT domain profile. 412 463 IPR017884 -
Bhi09g02703 805 PANTHER SWI/SNF COMPLEX-RELATED 71 804 - -
Bhi09g02703 805 SUPERFAMILY Homeodomain-like 412 463 IPR009057 -
Bhi09g02703 805 ProSiteProfiles Myb-like domain profile. 409 459 IPR001005 -
Bhi09g02703 805 SUPERFAMILY Homeodomain-like 189 285 IPR009057 -
Bhi09g02703 805 Pfam SWIRM-associated region 1 615 685 IPR032451 -
Bhi09g02703 805 Gene3D - 196 283 IPR036388 -
Bhi09g02703 805 ProSiteProfiles SWIRM domain profile. 190 288 IPR007526 GO:0005515
Bhi09g02703 805 MobiDBLite consensus disorder prediction 760 805 - -
Bhi09g02703 805 MobiDBLite consensus disorder prediction 39 61 - -
Bhi09g02703 805 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 71 804 - -
Bhi09g02703 805 MobiDBLite consensus disorder prediction 576 603 - -
Bhi09g02703 805 SMART sant 413 461 IPR001005 -
Bhi09g02703 805 MobiDBLite consensus disorder prediction 570 603 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02703 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101220514 1455.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01222 Bhi-Chr5:43788823 Bhi09g02703 Bhi-Chr9:72487120 1.15E-09 dispersed
Bhi09g02703 Bhi-Chr9:72487120 Bhi09g02756 Bhi-Chr9:73473415 2.32E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37