Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02708 CGTGAAGAAATTAGAGAGAGAATAAAAATCGAAGCTAATCCTTCTCTCCGACTGAACGCGGGAAAAAAGTATAAACCCTATTTGCGGTGCCGAGGAAGGTGGATCAGTAGTAGAAATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTAGCGCATCAGGATGAAGTGGTTCGGGTGCTCACCAACACCCTCGAGACTGCTAGTTGTCCCCACATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACAACCGCTCTTGCGATTTCCCATCAACTATTTGGTCCCGAACTTTACAAGTCCAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTTTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCGCTGAGGCGTACCATGGAAACACACTCCAAAGTGACACGATTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGATGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAGGTTATGAGTAAACGTATATTGCACATTAGTAATGAAGAAGGTCTTAGTCTAGACGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCAGCACGTTTATTTGGATCATCAATCTCTTCCAAGGATTTGGTTAGTGTGTCTGGGATTATCCCTCGGGAGGTTGTTGATGCACTTTTTAGTGCTTGTAAAAGTGGTAACTTTGATATTGCAAACAAGGAAGTCAACAATGTACTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTTGTTGTTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCCGAAGCAGACAAGTGTCTTGTTGATGGTGCGGATGAATATTTGCAACTGCTCGACGTGGTTAGTCAAACAATGCAAGCTTTAAGTAGTATGCAACTGTAAATCTTTGATTAAAACTCAGGCATGGGCAGTTTCAGGATCGGATAGATCTACAATCTACACATACCATGTTGTATAGATACTATGTAATTTCCGACTTGTAGAAATTGTTTTAGAACTGTATTGTAGCTGCTGTGTACTTAGCTAATTGATATGCTAAATCTTGTTTATTTAATCTCTCATCTTCTTATGGTTTGTTCAACATTTCCTTCTATTTCATTCAAATTCCGAGAAAGTATGGTTGACTCT 1372 41.62 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVSVSGIIPREVVDALFSACKSGNFDIANKEVNNVLAEGYPVAQMLSQIFEVVVEDNDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72651921 72658517 + XM_039041100.1 Bhi09g02708 45325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02708 336 Gene3D - 240 330 - -
Bhi09g02708 336 Pfam Replication factor C C-terminal domain 241 326 IPR013748 -
Bhi09g02708 336 PANTHER REPLICATION FACTOR C SUBUNIT 4 7 330 - -
Bhi09g02708 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 330 - -
Bhi09g02708 336 Gene3D - 176 239 - -
Bhi09g02708 336 CDD HLD_clamp_RFC 174 233 - -
Bhi09g02708 336 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Bhi09g02708 336 CDD AAA 26 166 - -
Bhi09g02708 336 Gene3D - 3 173 IPR027417 -
Bhi09g02708 336 SMART AAA_5 41 174 IPR003593 -
Bhi09g02708 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Bhi09g02708 336 SUPERFAMILY post-AAA+ oligomerization domain-like 240 326 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03026 Bhi-Chr1:75549181 Bhi09g02708 Bhi-Chr9:72651921 1.02E-11 dispersed
Bhi09g02708 Bhi-Chr9:72651921 Bhi11g00361 Bhi-Chr11:8642357 1.24E-62 dispersed
Bhi11g00927 Bhi-Chr11:28664779 Bhi09g02708 Bhi-Chr9:72651921 1.37E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02708 K10755 - csv:101221224 636.336