Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02711 GTCTCCCGCAATCTTGTCGCTCCGGAGATGTTCGACGCTCTTCACGACGCTCTCAAGCAGAATGGGGCTGAGGTTTTCCTTTGTTGCGATCCCTCTCGAAACGGCCCTAATGATTATCATGTTATCTCCTCCCCCGATCATGAAAAGTTCGAGGATCTTCGTGCGAAGGGATGCAATTTGCTAGTCCGACGCCTGGAACTTGGTGCGTCGCTGACGACTTGCATTTCTGTTCGGAAGGTCCTCAGTGCGTGATGTCATGTGCAAAAGAGCACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCAATGGATGGTGTGAAAATTCTAGCATCCGGATTTCAGGAAGATGAAAAGGTTGAGATAGGGAAGTTAGTTAATGCAATGGGAGGAGTATTGCATATGAAAGCATCACTAGATGTCAGCTTTGTTATTGCGAAGAATGCATTGGCTGCTAAATACAAGTGGGCACTAAACATTTCAAAGAAACCAATTGTGACATTTGCTTGGTTACAACAATGCTGGATTGAACATCGTGTAGTGCCTCAGGAGGGATATCGAGTCCTTCCATTTTCTGGATTGAATATATCGGTATCTAGGATTCCTGCAGGTGAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATATTCTGCCGATCTTACAAGAAAGTGCACACATTTGATATGTGATGCTCCTGAAGGTGACAAGTACAAGGTTGCACGGACATGGGGCCGTATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGCTAGAAAAGCATGTCTTAATGAGGAGTTGTACCCTGTTGGTAGCGTTTCTGGAACTTCGAATAAAATGACAAGGGGTTGTTTGACTGCTCACAATAGCCAAGAGAAGATTACTGGGAACTTGCAAGCTGTACCATCCTCATTTATTGCTGATTCAAATTTCTCAGCAGTTTCTGGTCCTGGGTTTTCAGATATGGATTTTGAAGCTACTCTTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTTGTGATGGGAAAGAACGAAGAAAACACTGATAATTGTATTGCAAATGACTTTCAGTCTGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGGAAGATTGTGAATATGATTCTCAGAGGTGGAGGCTCCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAAATCCCTCGGAAATGGAGAAAAAGGAGGTCAGAGATATTGCAGCTTCAGGAGTCATTCATGTTGTTAGAGCCAACTGGCTTGAAGATTGTGATCGTCAGAAGAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAACTTATTCCTAAAGGTTTGATATCATCCAGTAAAACGAGCACCATCGTTATGGATCCAAATAAAGTTCCGAATGTTCATCCAAGCGTGCCATCAAATGTGTTAGAAGGAAATGTTCATGTTAGAATTGGAAAGACATCGACGACAGAGGAAAAAATTGAAGAAAAAATTGAAACAAACGTGAGTGGTGACAGGACCATGAAATTATCCCAGAAAAGCCACCAATGCGTAGCAAATGGTACAAACAAGAGTCAAGAAAAGATGTGGCGTGATTTCATGGTTCCAAGTGGGAAGTCATCATGTGTGTTTAAGGGGAAAATATTTTGTTTTTCTAGTTCCTTTCCAGAAGATCGGAGGGCTGAAATTGTAGAGTGGATAAATCAAGGGGGAGGGGAGGTTGTTGAAGATCATACAAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGAGATACCAAGGAGTACAGATGTTCATACTACTTACGTGTCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGCCGTGTCCCTTTGTCTGGGTTTGAAAACATACGGTTCTGTGTTTCACAATATGATGATAAAGACAGAGTACTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACACATCTAATATGTAAGTTTTCCGATGGGATGAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAATTACAGCTGAATGGATATATGAGTGTGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCGGCAGGCTTATGCACTGTCAGTCAGTTTCCTACTCAAACTGTCCAAAGGATAGCCAGCGAAAGTGAATCCCAGTTTCCTATCCATTCTGCTATCCCGAGAGACCAATCAACTGGAACTAACAGTAGCTCTATAGGAGAAGTTGAACAAATAAGTTTTACTAAAAAAAGGCGCAAGTTCCTTGACGAAGCTATACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCACTCATTTTGACTGCAATTTGAACTCCACAAAAGAAACTACATCAAAATCTTCTGTGGTAACTTCACACGTCCCTGATGTCGCTGCCGCAATTGAGGATTTGTTGGAGCAGACAACTAAGATTCACGATCAGAAGTCACCTGGAAAGACTGACTGCGACAAAAGTATTTTCCCGCCCGACTGTTCGGGCGTTGGTCAAGACCATTCAGAAGCTCCTCCAATTGGTGGTTTATCCAACCAGTGGTCAAAAAGAGCTGAAAGAAAAGAAGACGTCAACAATCCTACTACTGGAGATGGGAGTGTAGGCATATATGATGGCTTTAGTGAAACACAAACTGAGTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCAGGAAGGCAAATGCTCATAGACAGAGTTCGAACTCGGAGTAGCATGACTTGAAACTACATCTGCTCTTGTAAATACACAAAGCCTTAAAGATCGTGGTAGGACTAGCTGCTGCGTTTTGAAGGTTTGATTAGAAGTCCTTTTCCAAATGAGTTTAATGTTATTCAAGCATTATTTCCATTTAGGAGTTGTAGAAAATATTTGAACCTTGATTGGTTGTATAGTTATAACCAAAAAGACCAAAAAAAAAAAAAAAAAAAGAAATCATTGAAAGATCAGTTTTGCATGGGGTTTTTATCCATTGTCTTGTGATTCAATGACATCTTGGCACTTGTAAGCTGGAAATTGAGCTATACTAAGCCGTTTTGCAAGTTATAGCCGTTTTGCAAGTAACACAGAAGATTTGTGGAGATTTTCGGCTAACTGATGGATGGTTATTCTACTGCCCTCTAAAAGGTGGGTTGAACGGTGGTGAACCGAACGGCTAAAAAACGTGGACGAGGCTGGGACGGCGCGCAAAGGGGCTGAGACACGAAGAAGCG 3421 41.71 MQFASPTPGTWCVADDLHFCSEGPQCVMSCAKEHRPLPQQGFTCCLAMDGVKILASGFQEDEKVEIGKLVNAMGGVLHMKASLDVSFVIAKNALAAKYKWALNISKKPIVTFAWLQQCWIEHRVVPQEGYRVLPFSGLNISVSRIPAGERKEIEKLILQNGGRYSADLTRKCTHLICDAPEGDKYKVARTWGRINIVTRKWFDQSIARKACLNEELYPVGSVSGTSNKMTRGCLTAHNSQEKITGNLQAVPSSFIADSNFSAVSGPGFSDMDFEATLSQSTSMFSDASHFINEVDVEVPVVMGKNEENTDNCIANDFQSENDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRANWLEDCDRQKKEIPILGRHMAYDELIPKGLISSSKTSTIVMDPNKVPNVHPSVPSNVLEGNVHVRIGKTSTTEEKIEEKIETNVSGDRTMKLSQKSHQCVANGTNKSQEKMWRDFMVPSGKSSCVFKGKIFCFSSSFPEDRRAEIVEWINQGGGEVVEDHTKQKVHFTVECHGEIPRSTDVHTTYVSSHWVRSCLEDGCLWDTNGHILYSPLPCRVPLSGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGMKYEAACKWGIHSITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQTVQRIASESESQFPIHSAIPRDQSTGTNSSSIGEVEQISFTKKRRKFLDEAIQKRSLFVGNSSTHFDCNLNSTKETTSKSSVVTSHVPDVAAAIEDLLEQTTKIHDQKSPGKTDCDKSIFPPDCSGVGQDHSEAPPIGGLSNQWSKRAERKEDVNNPTTGDGSVGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMT 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 72690256 72707224 - XM_039042829.1 Bhi09g02711 45328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02711 920 Gene3D BRCT domain 510 606 IPR036420 -
Bhi09g02711 920 Pfam BRCT domain, a BRCA1 C-terminus domain 515 595 IPR001357 -
Bhi09g02711 920 SUPERFAMILY BRCT domain 578 697 IPR036420 -
Bhi09g02711 920 SMART BRCT_7 610 686 IPR001357 -
Bhi09g02711 920 SMART BRCT_7 45 122 IPR001357 -
Bhi09g02711 920 SMART BRCT_7 515 590 IPR001357 -
Bhi09g02711 920 SMART BRCT_7 132 209 IPR001357 -
Bhi09g02711 920 SMART BRCT_7 322 402 IPR001357 -
Bhi09g02711 920 Pfam twin BRCT domain 139 201 IPR001357 -
Bhi09g02711 920 Pfam twin BRCT domain 617 678 IPR001357 -
Bhi09g02711 920 Pfam twin BRCT domain 51 114 IPR001357 -
Bhi09g02711 920 ProSiteProfiles BRCT domain profile. 320 412 IPR001357 -
Bhi09g02711 920 Gene3D BRCT domain 302 408 IPR036420 -
Bhi09g02711 920 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 24 908 - -
Bhi09g02711 920 ProSiteProfiles BRCT domain profile. 130 219 IPR001357 -
Bhi09g02711 920 CDD BRCT 51 118 - -
Bhi09g02711 920 Gene3D BRCT domain 46 133 IPR036420 -
Bhi09g02711 920 ProSiteProfiles BRCT domain profile. 613 696 IPR001357 -
Bhi09g02711 920 MobiDBLite consensus disorder prediction 847 883 - -
Bhi09g02711 920 SUPERFAMILY BRCT domain 322 406 IPR036420 -
Bhi09g02711 920 SUPERFAMILY BRCT domain 134 220 IPR036420 -
Bhi09g02711 920 Gene3D BRCT domain 134 221 IPR036420 -
Bhi09g02711 920 SUPERFAMILY BRCT domain 517 602 IPR036420 -
Bhi09g02711 920 CDD BRCT_TopBP1_rpt2_like 134 209 - -
Bhi09g02711 920 ProSiteProfiles BRCT domain profile. 48 132 IPR001357 -
Bhi09g02711 920 CDD BRCT_TopBP1_rpt2_like 613 686 - -
Bhi09g02711 920 Gene3D BRCT domain 610 703 IPR036420 -
Bhi09g02711 920 SUPERFAMILY BRCT domain 23 132 IPR036420 -
Bhi09g02711 920 ProSiteProfiles BRCT domain profile. 513 600 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02711 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1 - csv:101212525 1555.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01532 Bhi-Chr4:38385904 Bhi09g02711 Bhi-Chr9:72690256 4.04E-09 dispersed
Bhi04g01533 Bhi-Chr4:38385904 Bhi09g02711 Bhi-Chr9:72690256 4.04E-09 dispersed
Bhi09g02711 Bhi-Chr9:72690256 Bhi09g02713 Bhi-Chr9:72690256 0 dispersed
Bhi09g02710 Bhi-Chr9:72683816 Bhi09g02711 Bhi-Chr9:72690256 0 tandem
Bhi09g02711 Bhi-Chr9:72690256 Bhi09g02712 Bhi-Chr9:72690256 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44