Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02869 TTCACCGTCCACTGCAAGATGAAACATTTATCCAGGTTACCGCCAAATTCAAGTACAATAAACCCTAACTTTTCCCGCCAAAGCTTTTCCGAGAAACCACCACCAAATCGAACCGAGTACAGAACTCCATAGTCGATAGTGTAGTTCACCAAGCTAGGTAGCTCTCAGGGAGTTCGAATATCCCCACCCGACAAGTTCTTTGCAACACTGCCAAAATGGTATATGCAAAAGGGGGGACGAACCCTAGATCCAAGCCCAATCCGACTTATCAGCTCACGAAGAATGTATACCCGATTGGTGGCATCCAAGTGGAATTTCCATTCCGACCATACGGTTCGCAGCTCGCATTCATGGGCAGAGTTATATCCACCCTCGATCGAGCCCAGCGTGAGGGCCATTGCCACGCATTGCTGGAATCTCCGACTGGAACCGGGAAGTCGCTTTCACTTCTGTGCTCGAGTCTCGCTTGGCAGAAGAATTACAAGATAAAGAATCAGGATGCTAATTCCTGTCACTTGAAGCCCGCTCCAGAGGCTGCCACAGATGCTCTCGGTTTTGGCGGTGGATTTATTCCTGAAGTGCAGCCGTCAATGTCTCTAGATACAGAGTCATCTGTTCCAGTGCCAAACAACAAAAGTCAGAAGAAAACAGCCCCGACCATATACTATGCCTCGAGGACACATTCACAGATATCACAAGTGATCCGTGAGTATAGGAAAACTGTCTATCGAGTGCCAATGGCAGTGCTGGCGTCAAGGAAACATTTATGCACAAATCCTTATGTACGAGGGAAAGATAATATAGATGAAGAATGCAAACTACTTTTGAAGGATCAAGATGCAGGATGCTGTGAATTTAAAAACGCAAACAAGGTTAAAAGTCATCCAACTCTTCAGAAAGGAGGATGTCATGAGGTTCATGACATTGAAGATTTGGTGCAAGTTGGAGAAGTTGTGAAAGGTTGTTCATATTATGCAGCTCGTTCTATGGCAGACGATGCACAGCTGGTGTTTTGCCCATATAGCTATATTATCAATCCAGTTATTCGAGGAGCAATGGATGTAGATATTAAGGGTGCGATTGTGATCCTTGATGAAGCCCACAATATAGAGGATATTGCTCGTCATGCTGGTAGTGTGGATGTTGAAGAGGATACTTTAAATAAATTGCGGATGGAGTTAGAGCAACTATGTTATATTAATTCTTTGGTTTACCAGCCTCTGTATGAAATGACACAGGATCTCATAAGTTGGATTGACCAGAGGAAGACCACATTGCAGAAGCGTGAGTTTCAGCATTATGTTACCTGTTGGACTGGCAATCATGCTCAAAGGGAGCTCCAAGAAGCTAATATAACTCAACAATGCTTCCCTATTTTGCTTGAATGTGCAACGAAGGCTATTAAAGCCGCTTCAGATGCGGAGTCTGATGATGCACATTTGAGTGGCCTGTCAGTGATAACACTGGAAGGGTTATTCTCTTCACTGACATATTTCTTCTCAAGAAATGGTTGCCACATGTCTGATTACCAGCTTGCGTTACAACGCTACGTTAAAAGAGATCCTGGAAAAGCTTATGGTGACTGGACGCTTACTTTAAGTTTGTGGTGCTTGAATCCAGCTGTTGTATTTAGAGACATTGGTGATCTTTCCTTATCAGTTATTTTGACTTCTGGGACCCTGTCACCTATGAATTCCTTCTCATCTGAACTAGGAGTTCAATTTGGAACTTCACTGGAAGCTCCTCACGTAATTGACGTGGAAGCTCAGGTGTGGCCAGCTATTATATCAACTGGTCCAGGAAACTATCCTCTCAATGGAAGTTATAAAACGGCCGATGGATATGCATTCCAGGATGCTCTAGGAAAATCTTTGGAGGAGATATTTTTGATTGCTCCTGGTGGCTGTCTTGTGTTCTTCCCTAGCTATAAGCTGATGGAGAAACTCCAAAATCGTTGGTCTGAAACTGGTCAATGGTCTCGACTGAATGCAAGGAAGTCCCTTTTTGTTGAGCCAAGAGGAGGAGCTCAAGAGGATTTTGATTCCATTTTGAAAGGTTATTATGATACTATACGTCTTGGTGATAACTTTGCAGTCGGGAAGAAGAGGCGAGGTAAGAAGGACAAACCCAATCACCCATATGTGGTTGGCTGTGAAAATCCCAAGGAAGGTGCAGCACTCCTTGCAGTTTTTCGAGGAAAGGTTTCAGAAGGAATAGACTTTTCTGATGATAATGCTAGAGTGGTTATAATAGTTGGTATTCCATTTCCAAATATAAATGATATTCAAGTTGCGTTGAAGAAAAAGTTCAATGACACATATAAAATGTCCAAAAACCTTTTAAGTGGAAATGAGTGGTATTGTCAACAGGCTTTCCGAGCTTTAAATCAAGCTGCAGGACGTTGTATTCGACACAAGTTTGATTATGGTGCCATTGTGCTATTAGACGAGCGTTTCCAGGAAGAGAGGAACAGGACGTACATTTCAAAGTGGCTAAGAAAATCCATTAAACAATTTGATAACTTTGAACAGTCTATGGAGGAGCTGAAATACTTTTTCAGCCACATTAAGGGGCGCATTAGCACCAACACAGAAAGTGAATTGCCGAAGTCTGAGAATGAGGAGCACATTACTTCTACCTGCCCAAGTAGTTGTAGAAGAAAGAAGATAGAGAAATTTGACAAGTTAAATTATCGTGGGCAGAAAGCTCACGAAGATGCGAAAAACTGTATAATTGATGTGGAGTGCAGCATTGAAACAGAAACGAGGAACCATGAGTTTCTATCTATGAATACCGTCCTTGAAGTTCCAGATTCACCGATTGCGCTGGAGACTCCTTGTGTTGGTATTGGAGGCACCACTAGTCCAGGAGACTCCAAAGATGAAAGATCGACTTCAACCGTAATTGAGGCCTCTTCTGAATTTTCTGATCAATTATCTTATCATTCATTACCTTTAATCAAATCAACAAGATCTCCTCTTACAACTGAAAGTTCAATTCTTCATACACCTGAAAGAAATGTAGCTGCAAATGCCTACAGCGTTACACGAGATACAGAATCTTCTTTGAATATGAGTGTAAACTCTCATACCCAGAAAAGGAGGAAGTCCATCGGTTTAACTATTGCGAAACTTGCTCAAGAAGAGTTTGTTGCTGATCCTGAAACCAAAAATTCTGAATGCAACAGTGTGGACAGAAGCTCAATAATCAGCGGAAATTTGACTAGCCCAAAAGATACCAGTTATGAAATTCTTCTTACAGAAAAGAAGAAGAGTTTAAATGTCACCCAAATGCTCAAGCTAAATGACACTATTCCTGTTTGTCTGTCTTCTGGCCTTCCAATGGACAAAAAGTTGCATCTGTCTTGTGCACTTTGCAGAAGCCCACTTGGTCGCCCAGAGAACCATTTAAACATAACGTGCTCATTTACTGTATCATCAAAAACACATTTAATATCGATATATAAAGAAAGGTTGAAAGCTCAAACTGCCAATTCGCCAACAAGTGTACTGCTTATTATTACAGACATCATGTTTGTTAACCAGAAGGTCCTAGTTAGGTCTTCAAAAGATTCAGGACGTGGTATCTGGAGTGAGGAGGATGGTTGCGTATACAATTGTGTCTTTTGCCCCTTCTGTTGCACTGACAATTGTATTGGTGTACAGATCATGGCGACTGATGCATCAAATATTCAGTTACTTAATAAAGTGATGTTTTACTTGGAGTGTTTGGAGATCCAAGACCTAAAAGCTGATACAGGAAAGGCTTCAGTAAACAAGGAATTATCACCCGTTAGTAGCTTAGCCAAGAATAAGTTTGCCGTCATGGAACCCATTGAAAATTTTTCGTACTCCCCTAGCCCGCTAACCTCAGGTTGCTGGAGATCTACTAAATCGAAAGTCAGAAGGAAAGGAACTTCATAGAAGTACTCATCAAGACTCATTCTGCTTGGCTTAATTTAACAACAGTCCTGGGCAGTAGTCCAAACTAATAAGATTGCCTGGATGTTTACGTGGTGCTATAATGGGAGATCTGGCCATTTCTCTTGGTCAAACTCATCATTCAAAGAATGCAGCTAAGGTGGAAGCGTCGGTGTGTCTGGACAAAAGAATCTCTTAATCTATGTTCATTTATACTACAATTGTAAAGTTGACTGCATATTTATCTCGATCATTTGTATCCAGGTTGTGAAGCCCTCTGTATAGTTTAACAATTGTTTTGTCATGCGTCATGCTGTTTTAGATAGGATAGCATTGTAGATCCCAACTAACAATAGTGTTAGATAACTTCCATGACCCATCGAGGGTATGATTGTTGCACTCAAATTGGAAGGTTTGTGAATTTAGTGTTTCGGGTTTACCTTCATGATCTCTTGTAAATGATCTTTTTCATTAAGAAAAAAAAACAAAAAAACTTTTTCCGTGAACAATGATCATTATTCTGGAAGACGTTGCATTATGTACTATTTTCTAGCCATTTGGCTAGTTAATTCATCAGACGCAACTGTTTGAGTTC 4515 41.13 MVYAKGGTNPRSKPNPTYQLTKNVYPIGGIQVEFPFRPYGSQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSSLAWQKNYKIKNQDANSCHLKPAPEAATDALGFGGGFIPEVQPSMSLDTESSVPVPNNKSQKKTAPTIYYASRTHSQISQVIREYRKTVYRVPMAVLASRKHLCTNPYVRGKDNIDEECKLLLKDQDAGCCEFKNANKVKSHPTLQKGGCHEVHDIEDLVQVGEVVKGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMDVDIKGAIVILDEAHNIEDIARHAGSVDVEEDTLNKLRMELEQLCYINSLVYQPLYEMTQDLISWIDQRKTTLQKREFQHYVTCWTGNHAQRELQEANITQQCFPILLECATKAIKAASDAESDDAHLSGLSVITLEGLFSSLTYFFSRNGCHMSDYQLALQRYVKRDPGKAYGDWTLTLSLWCLNPAVVFRDIGDLSLSVILTSGTLSPMNSFSSELGVQFGTSLEAPHVIDVEAQVWPAIISTGPGNYPLNGSYKTADGYAFQDALGKSLEEIFLIAPGGCLVFFPSYKLMEKLQNRWSETGQWSRLNARKSLFVEPRGGAQEDFDSILKGYYDTIRLGDNFAVGKKRRGKKDKPNHPYVVGCENPKEGAALLAVFRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKKFNDTYKMSKNLLSGNEWYCQQAFRALNQAAGRCIRHKFDYGAIVLLDERFQEERNRTYISKWLRKSIKQFDNFEQSMEELKYFFSHIKGRISTNTESELPKSENEEHITSTCPSSCRRKKIEKFDKLNYRGQKAHEDAKNCIIDVECSIETETRNHEFLSMNTVLEVPDSPIALETPCVGIGGTTSPGDSKDERSTSTVIEASSEFSDQLSYHSLPLIKSTRSPLTTESSILHTPERNVAANAYSVTRDTESSLNMSVNSHTQKRRKSIGLTIAKLAQEEFVADPETKNSECNSVDRSSIISGNLTSPKDTSYEILLTEKKKSLNVTQMLKLNDTIPVCLSSGLPMDKKLHLSCALCRSPLGRPENHLNITCSFTVSSKTHLISIYKERLKAQTANSPTSVLLIITDIMFVNQKVLVRSSKDSGRGIWSEEDGCVYNCVFCPFCCTDNCIGVQIMATDASNIQLLNKVMFYLECLEIQDLKADTGKASVNKELSPVSSLAKNKFAVMEPIENFSYSPSPLTSGCWRSTKSKVRRKGTS 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 75594653 75624994 + XM_039041927.1 Bhi09g02869 45486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02869 1235 Pfam DEAD_2 151 315 IPR010614 GO:0003677|GO:0003678|GO:0005524
Bhi09g02869 1235 PANTHER FANCONI ANEMIA GROUP J PROTEIN 19 1091 - -
Bhi09g02869 1235 SMART deadxpd 30 330 IPR006554 GO:0003678|GO:0016818
Bhi09g02869 1235 CDD SF2_C_XPD 518 747 - -
Bhi09g02869 1235 Gene3D - 37 354 IPR027417 -
Bhi09g02869 1235 Pfam Helicase C-terminal domain 554 762 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Bhi09g02869 1235 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 28 343 IPR014013 GO:0005524
Bhi09g02869 1235 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 19 1091 IPR045028 -
Bhi09g02869 1235 Gene3D - 530 777 IPR027417 -
Bhi09g02869 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 743 IPR027417 -
Bhi09g02869 1235 SMART Cxpdneu3 571 749 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02869 K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein [EC:5.6.2.3] - csv:101217839 2252.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00118 Bhi-Chr9:2731732 Bhi09g02869 Bhi-Chr9:75594653 4.23E-75 dispersed
Bhi09g00119 Bhi-Chr9:2733050 Bhi09g02869 Bhi-Chr9:75594653 4.23E-75 dispersed
Bhi09g00151 Bhi-Chr9:3364121 Bhi09g02869 Bhi-Chr9:75594653 1.74E-53 dispersed
Bhi09g00152 Bhi-Chr9:3364121 Bhi09g02869 Bhi-Chr9:75594653 8.17E-45 dispersed
Bhi09g01033 Bhi-Chr9:24003570 Bhi09g02869 Bhi-Chr9:75594653 1.80E-15 dispersed
Bhi09g01034 Bhi-Chr9:24012227 Bhi09g02869 Bhi-Chr9:75594653 9.48E-09 dispersed
Bhi09g02869 Bhi-Chr9:75594653 Bhi09g02870 Bhi-Chr9:75605170 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007710 1 2 1 1 1 0 1 0 0 2 1 1 1 2 2 1 0 1 1 1 2 1 1 2 1 1 1 1 1 1 32