Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02871 ACCCCCGCAATCAATGTTAGAGTGCGCGTCCGACGTGGCATGTTTTTTTTTAGGGTCCAGTCCAATTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGCTTTCCCCCCTTTTTGCTTTGCTTAGAGGAGAAAAATGGAAATGGCCAAATGGGTTAGCTGAGAATAGAGAGAAAGAGAGAGAGAAACGAACCCACAAGTTGCAGAAGCAGAGGATGATGGAGTGGCAGAACCAGAACCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTGGAGCAATTGAGCAACGCCGATGGAGTTAGTGGCCTCTATGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATTTGTGAGCAGCTTGTCGAGATGCACAAGGCAATCACCGCCCAGCAGGACCTTGCGGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCCAGGCAGAGGTGGACGCCTACGCCTGTGCAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGAACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAGAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAGTAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAACTTACGAACACTTCGTTCCGAAGTCAGGCAACATATACTCTCAGAGAACTGATTTAAGTACTGAAATACATTCCTTTGACGTACAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGATCTGGTCATATCAGTCAGATGACTCCAATACAGAATCATAGAAATAATCTGTCGAATGATAAAATGAACGTGCCAGATTACTCTCCTTACACTCCTTGTGAAGGATATCACTTGGTCGAGTGATGCTTCTATCATTCCGCTGATGTGCTTGTCTGCTTGTCCTGAAGCTCATCCTGGAGGAATGTGCACTGACATAGTAAATATTATACTGCATGTAAAAGGAATTCAAATTTTGAAAATGCTTGTAAGGCATTTTATATACGTGGTTATGAATTATATAGCTTACTGTACTGCTTTAAACCAATTTTTGAAGGATTTGATTAAATACGTTATTACTTTTTGGTACAAAA 1263 42.6 MLECASDVACFFLGSSPILLLLLLLLRVLSPLFALLRGEKWKWPNGLAENREKEREKRTHKLQKQRMMEWQNQNQQQQNQTEQLQMQMQVEQLSNADGVSGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSVPSNADSEPETEVDSPKEKKTKPETFQTYEHFVPKSGNIYSQRTDLSTEIHSFDVQSNKGEPMFQSFGSGHISQMTPIQNHRNNLSNDKMNVPDYSPYTPCEGYHLVE 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 75625226 75627067 - XM_039041929.1 Bhi09g02871 45488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02871 340 ProSiteProfiles 'Homeobox' domain profile. 163 228 IPR001356 GO:0003677
Bhi09g02871 340 Coils Coil 53 87 - -
Bhi09g02871 340 CDD homeodomain 167 229 IPR001356 GO:0003677
Bhi09g02871 340 PANTHER - 68 330 - -
Bhi09g02871 340 SUPERFAMILY Homeodomain-like 166 229 IPR009057 -
Bhi09g02871 340 SMART HOX_1 165 232 IPR001356 GO:0003677
Bhi09g02871 340 MobiDBLite consensus disorder prediction 242 257 - -
Bhi09g02871 340 Pfam Homeodomain 167 227 IPR001356 GO:0003677
Bhi09g02871 340 Gene3D - 169 233 - -
Bhi09g02871 340 PANTHER WUSCHEL-RELATED HOMEOBOX 13 68 330 IPR044559 GO:0003700
Bhi09g02871 340 MobiDBLite consensus disorder prediction 224 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02871 - - - bhj:120085747 644.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02871 Bhi-Chr9:75625226 Bhi11g00264 Bhi-Chr11:6084567 5.02E-92 dispersed
Bhi11g02705 Bhi-Chr11:72529669 Bhi09g02871 Bhi-Chr9:75625226 4.30E-14 dispersed
Bhi09g02871 Bhi-Chr9:75625226 Bhi08g01290 Bhi-Chr8:39357629 7.19E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01290 CCT,ECH 1 198 Wox Gene Family AT3G18010 54.3 5.2e-47 186.0
Bhi02g00135 CCT,ECH 1 165 Wox Gene Family AT3G18010 54.4 4.2e-41 166.4
Bhi11g02705 . 18 242 Wox Gene Family AT3G03660 52.6 5.5e-50 195.7
Bhi11g00265 . 1 275 Wox Gene Family AT4G35550 50.3 7.4e-70 261.5
Bhi11g00264 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi11g00266 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi09g02871 . 101 290 Wox Gene Family AT4G35550 57.4 1.1e-57 221.1
Bhi04g00375 . 5 168 Wox Gene Family AT1G46480 62.2 1.0e-49 194.1
Bhi03g00342 . 1 388 Wox Gene Family AT2G33880 50.1 2.5e-66 250.4
Bhi08g01290 CCT,ECH 1 198 Wox Gene Family AT3G18010 54.3 5.2e-47 186.0
Bhi02g00135 CCT,ECH 1 165 Wox Gene Family AT3G18010 54.4 4.2e-41 166.4
Bhi04g00375 . 5 168 Wox Gene Family AT1G46480 62.2 1.0e-49 194.1
Bhi03g00342 . 1 388 Wox Gene Family AT2G33880 50.1 2.5e-66 250.4
Bhi11g02705 . 18 242 Wox Gene Family AT3G03660 52.6 5.5e-50 195.7
Bhi11g00265 . 1 275 Wox Gene Family AT4G35550 50.3 7.4e-70 261.5
Bhi11g00264 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi11g00266 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi09g02871 . 101 290 Wox Gene Family AT4G35550 57.4 1.1e-57 221.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1981 PF00046 Homeodomain 1.20E-17 CL0123 Bhi TF