Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02889 TAAATTGGTTAGTGGGAAGTCCATTGGATGCAGCGTATGCAGTCAGATTAGTGCACATGGCAGTAAACTTTTAATTTCTAGTTTCATCTCTGTTTCAGGAGCTTTGAGATTGCAGGTAATTACTAAAATTAGTTTTTGGAGAAAATTCAGGAACTGGGTCATCGTCTTTATCGTCAAAATTTAAAATTGTTATGAGCATCTTCTTCATCTTGTTCGTCAGTGGGTTTGGTGAGTGGTGGTGGATAATCCGAAGGATTAAAGAGAAGTGGGGGGAGCCTGCAATATGCAAGTGCTTGTTAAATAGTTTTATACTTTTTAAACCCTTGATTTGAAAGATTCTGATTCTGATGGATACTTTTTGTATTTGTATATAATTCCGCTTACCCAAATTAAATAATCATGTCAAGTATTCAAAGATTTATTCTTTAATCTCATCAATGCCATTAGTTTTCTTTTCACCCACACATCACATAATTAAGCGAAGCGAGCGAGAAAGCTCTGTTTTTCATTTGCTTCTCATTTTTCTGTGTTTGTTTGTTTTTTTTTTTTTTTTTGTTTGTTTGAGAGAGTGTGCAATTGCAAGTTGACTTTACAGCGAGAATTCCAAAGCCGGACGCAAAGTGTTTGTGGGGTCATACTCGAAATTCGACGGGAGAATCTTTAGCATTAGAATCATACTGAATAAAAGCAGTTACAAAGGGAGGGGGCCGGAGAGAGGCATTATTGGGAGAAGAACTTTGCTGATTTTCTTCTGGTTTAGGCTGTAAAAAGCTCTCTCAGGAGATCATTCTTCACTTCTGTTTCTGTACCAGACCTCTCTCTCATGTTCCTATTCTTCAGACACTTCTTCTTCCTGCTCATTTCAGGAACAGTGCAGAAATAATTATAACTACCCACTTGGGAATCTCTTCGAATCTTTCAAATTTGTTGGTTCTTCCTAAACCTGGACTGAAATTTCTTCTTCTGGGGTTGTATCTGATACTGGATCGGTTTAGGCTATATCTGATTCAGTGGTAAGAAGTTCTAAGCATCTTGGGGTTTTCTGGGGAGTTTTCTTTTATGGATGATGGTATGTTATCACCAGCTACAATGCTGGATGCTCCAGCTGACACTGCCATGGATTTGGACTACATGGATGGGCTGCTTTTGGATGGATGCTGGTTAGAAACAGCAGATGGTACTGAGTTTCTTCATACTAGTCCCTCAAGTTTTGGTGTCAACTTAGACCCTTTAATTGGATGGCCTGCTACAGAGATGAATGGTGATTTTAACATGATCCAGATTGCAAGAAATAATCAAGAAGAACCTAGGAAAGTCTTGACTGATGAGATGTCTTTGGGGAGGAAAAGAATTGATATGGGGCAAGAGGGATGCTCTGGTCAATCAGAAAACAATGGTTTTGAAGGTTCTGAATTGTGTAGAAGATTGTGGATAGGACCTGGGGAACATCTGGGTTCTGCTGCTTCTGTGATGGAGAGATTGATTAGAGCTGTTGGGTATATTAAAGATTTTGTAAGAGATAAGGATGTTCTTGTACAAGTATGGGTGCCTATAAATAGAGGGGGAAGAAATGTTCTCATCACAAATGATCTGCCATTTTCTCAGAATTCCAGCTGCACAAGACTCACTAAATACCGGGATGTCTCTGTGAAATATGAATTCACTGCTGATGAAGATTCTAAAAATACTTTGGGATTGCCTGGTCGAGTCTTCTCAAGAAAGGTTCCAGAGTGGACTCCTGATGTTCGATTCTTTAGAAGGGACGAATACCCGAGAGTCAATCATGCTCACGAACACGATGTACGTGGAACTGTTGCACTTCCTATTTTTGAACAAGGTAGCAAGAACTGTTTGGGAGTCATTGAAGTTGTCATGGTTACCCAGCAGATCAAATATGGTTCAGAACTTGAGAATGTTTGCAAAGCTCTTGAGGCAGTCAAGCTTAGGAGCTCTGAAGTTATCGGCCACCCCAATAAAAAGCAGGCATTTAACAGGTCCAACGAAGCTGTATTATTAGAGATTCAAAACACTTTGGAATCTGCTTGTGAAACGCATGGCTTGCCTTTGGCGCAAACCTGGGCATCATGTATCCAACAAAGTAGAGGGGGTTGCCGGCACTCGGACGAGAACTACAGTTGTTGCGTTTCTACGGTAGACCGGGCTTGCTTTGTTGCTGATCAACGAATTCGGGAATTTCATGAGGCATGCTCTGAGCATCATTTGCTAAAAGGCGAAGGCATTGTGGGGATGGCATTTAAATCTAACGAGCCGTGTTTCTCAAGTGATATTACATCCTTTTGTAACACAGAATATCCTCTTTCTCACCATGCCAAGCTATTTGGATTACATGCTGCGGTTGCAATACGCCTTCGTTGCATTTATATTAGTAAAACCGATTTTGTATTGGAGTTCTTCCTGCCTGTAAATTGTAGAGATCCTGAAGAGCAGAGAGTGCTACTCACTTCATTGTCCACAATTATACAACGATCTTGCAGGAGCCTGCGTCTTGTAACAGATAAGGAGTGTAGGGAGGAAAATATGCAACAATCTTCTCGATGTTTACATCTTGTTACAGACGTAAAGCTTGGAGAGGAAAGCAACTTTCCATTCGGAGAGGCAGGTGTCAATGCAAATGGGAGATCCGTTATGCTGGAAATGTCCAAGGTACAAAACCATCAGTTAGAAACAAGTCATCCAACAAATTCATTGTTAACTTCATCTGTTCAAAACATCCAACAACATAGTGGCTTTGTCTCATTATTCCAGGGGAGCAAAACAGCGGAAGTCTTAAGTTCCTCTGGTTACCAGCCTCATGAATTTAATTACGATCTGAATGGAGTTGTCGAGGACAGTGAAGAGTGCGCGACTGTAGGTAATGGTAGCTTTTCTGATGTAGGTTTGGGAAGAACTGGTGAGAAAAGACGAACCAAGGTGGACAAAACTATCACCTTACAAGTTCTTCGGCAATATTTTGCGGGTAGCTTAAAAGATGCTGCAAAGAGCATTGGAGTTTGTCCTACCACATTGAAAAGGATATGTCGGCAACATGGGATTAAACGTTGGCCTTCTCGAAAAATAAAAAAGGTTCAGGTTCAGGTCCACTTTTAAGTGCAAAAATTGGAGATGGCCTGAAAACATCAAGCAATCAAAATGAAGTTGGTATGAGCAACCTCCAAGGTGCAGCATCGAAATCTCCATCTTCATCATGCAGCCAAAGCTCGAGTTCAAGCCAATGCTTTTCTAGTCGGAGCCATCA 3256 40.88 MDDGMLSPATMLDAPADTAMDLDYMDGLLLDGCWLETADGTEFLHTSPSSFGVNLDPLIGWPATEMNGDFNMIQIARNNQEEPRKVLTDEMSLGRKRIDMGQEGCSGQSENNGFEGSELCRRLWIGPGEHLGSAASVMERLIRAVGYIKDFVRDKDVLVQVWVPINRGGRNVLITNDLPFSQNSSCTRLTKYRDVSVKYEFTADEDSKNTLGLPGRVFSRKVPEWTPDVRFFRRDEYPRVNHAHEHDVRGTVALPIFEQGSKNCLGVIEVVMVTQQIKYGSELENVCKALEAVKLRSSEVIGHPNKKQAFNRSNEAVLLEIQNTLESACETHGLPLAQTWASCIQQSRGGCRHSDENYSCCVSTVDRACFVADQRIREFHEACSEHHLLKGEGIVGMAFKSNEPCFSSDITSFCNTEYPLSHHAKLFGLHAAVAIRLRCIYISKTDFVLEFFLPVNCRDPEEQRVLLTSLSTIIQRSCRSLRLVTDKECREENMQQSSRCLHLVTDVKLGEESNFPFGEAGVNANGRSVMLEMSKVQNHQLETSHPTNSLLTSSVQNIQQHSGFVSLFQGSKTAEVLSSSGYQPHEFNYDLNGVVEDSEECATVGNGSFSDVGLGRTGEKRRTKVDKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKVQVQVHF 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 75834596 75839335 - XM_039041803.1 Bhi09g02889 45506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02889 682 PANTHER PROTEIN NLP8 17 676 IPR045012 GO:0003700
Bhi09g02889 682 Pfam RWP-RK domain 628 676 IPR003035 -
Bhi09g02889 682 ProSiteProfiles RWP-RK domain profile. 615 682 IPR003035 -
Bhi09g02889 682 PANTHER PROTEIN NLP4 17 676 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02889 - - - bhj:120085671 1367.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02887 Bhi-Chr9:75833559 Bhi09g02889 Bhi-Chr9:75834596 0 dispersed
Bhi09g02889 Bhi-Chr9:75834596 Bhi01g01498 Bhi-Chr1:30740895 2.61E-06 dispersed
Bhi09g02888 Bhi-Chr9:75833559 Bhi09g02889 Bhi-Chr9:75834596 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g02889 . 17 676 NLP Transcription Factor Family AT1G20640 50.6 4.4e-169 592.8
Bhi09g02889 . 15 676 NLP Transcription Factor Family AT1G76350 50.4 5.5e-169 592.4
Bhi01g02980 . 187 993 NLP Transcription Factor Family AT1G64530 51.3 2.7e-217 752.7
Bhi01g02979 . 187 1003 NLP Transcription Factor Family AT1G64530 50.7 5.7e-215 745.0
Bhi01g02981 . 116 932 NLP Transcription Factor Family AT1G64530 50.7 5.7e-215 745.0
Bhi01g02980 . 266 993 NLP Transcription Factor Family AT4G24020 54.7 6.6e-200 694.9
Bhi01g02979 . 266 1003 NLP Transcription Factor Family AT4G24020 53.9 1.4e-197 687.2
Bhi01g02981 . 195 932 NLP Transcription Factor Family AT4G24020 53.9 1.4e-197 687.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003158 2 5 3 1 2 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 4 4 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1988 PF02042 RWP-RK 2.40E-25 No_clan Bhi TF