Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02941 TCTGCATAACAGTTGCCTTTCACGCTTCCAACCATCTTCTTTAATTCCAGCTTCCCCTCTCTTCCCTCTCTCTTTTAATTTAATTACTTTATCTTGGAAATCATATGTTCTTTAATACCATCATTACCTTTTCTCTTTCCTTTATTCTCTACTCTATTATCTCTCTCTCTCTCTTTCTTTCTACCTTCTTCATCTTCCTTTCTCTCATTTTTCCGGTCATGTCACCGCCGGCCACCACCAAAAGCTGGAACGGCGGCCTGGATAAACATTATCCTCCGCCACTCGCCACCCACGATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAAGTTACAAGAAGAGGAGGACATGAAAAGGTTGTTGCAGAGAAAAAATGGAGAGAAGTTGGAAGTGTTTTTAAGTTCTCTCCTACAACAACGAGTGCTTCCTTTGTATTGAGAAAACATTATCTTAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAGGGCCCCATCTGTGTCCCTCAAGCGCCATTTCCTCTTGGTAGCCCTACAAGTGAAAATGAATTGGCTTTGGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCGCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTTGTGACGGTGAAATTGGGATCTGAGATTCTTAGAGGAGTTCTTTACCATCCAGAGCAGCCACCTCCGTCAGATCTCCGGCCTCAGTCTACCAATGCCATTGTACCGTATACCGGTGGCAGATATCGACATTCCGGTAGGCGGCACCGGAGGAGCCGGAGAAAGGGAGATCCAAACCATCCAAAACCAAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAAAGGGAGTTCACTAAAATGATTGGAGAGTCTTGGAACAATCTTAGCCCTGAAGAAAGGACGGTTTATCAAAACATTGGGCTTAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCAGGCAAGTGATGTTGATGGAGTTTATTCAAAACATGGAGAGTAGCAGCAGAGGAGGAAGAAAATTCAGCAGTTTTTTTTTTTTTTTTTTTTTCTTCTGGTGGGATTTGCTAAAGTTATATGATATATAGATTTTGTATCATATCGTATCATATCCCCTAACTTTACATGGCAAACCATAGGTTTGCATATCCATAGTGCTTGGCCACAAGTTTTTACAATCACTTACAAAAGTTACTCTTGGAA 1390 41.58 MFFNTIITFSLSFILYSIISLSLFLSTFFIFLSLIFPVMSPPATTKSWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPLGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKLGSEILRGVLYHPEQPPPSDLRPQSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERTVYQNIGLKDKERYKRELKEYKEKMRQASDVDGVYSKHGE 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 76665815 76667799 + XM_039043571.1 Bhi09g02941 45558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02941 361 MobiDBLite consensus disorder prediction 257 273 - -
Bhi09g02941 361 ProSiteProfiles ARID domain profile. 67 158 IPR001606 GO:0003677
Bhi09g02941 361 Gene3D High mobility group box domain 260 355 IPR036910 -
Bhi09g02941 361 SMART bright_3 68 159 IPR001606 GO:0003677
Bhi09g02941 361 MobiDBLite consensus disorder prediction 234 282 - -
Bhi09g02941 361 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 53 350 - -
Bhi09g02941 361 SMART ARID_2 64 154 - -
Bhi09g02941 361 SMART hmgende2 275 344 IPR009071 -
Bhi09g02941 361 CDD HMGB-UBF_HMG-box 276 340 - -
Bhi09g02941 361 Pfam HMG (high mobility group) box 276 343 IPR009071 -
Bhi09g02941 361 CDD ARID_HMGB9-like 69 154 IPR045303 GO:0003677
Bhi09g02941 361 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 276 343 IPR009071 -
Bhi09g02941 361 SUPERFAMILY HMG-box 273 347 IPR036910 -
Bhi09g02941 361 Pfam ARID/BRIGHT DNA binding domain 73 154 IPR001606 GO:0003677
Bhi09g02941 361 Gene3D - 63 164 IPR036431 GO:0003677
Bhi09g02941 361 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 53 350 - -
Bhi09g02941 361 Coils Coil 332 352 - -
Bhi09g02941 361 SUPERFAMILY ARID-like 64 166 IPR036431 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02941 - - - csv:101219101 608.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02941 Bhi-Chr9:76665815 Bhi12g01502 Bhi-Chr12:48452704 1.37E-94 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g01502 . 103 456 ARID Transcription Factor Family AT1G04880 58.2 6.7e-108 388.7
Bhi11g00337 . 228 497 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00335 . 226 495 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00334 . 197 466 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00336 . 192 461 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi09g02941 . 54 347 ARID Transcription Factor Family AT1G76110 68.2 2.2e-111 399.8
Bhi11g00337 . 207 527 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00335 . 205 525 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00334 . 176 496 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00336 . 171 491 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi01g02835 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi01g02834 . 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi09g00270 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00271 CCT,ECH 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00272 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1989 PF01388 ARID 3.60E-18 CL0123 Bhi TR