Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02986 ACTTGCTTTGGTAAGGGCTTCGCTTTTGGCCCCTTCCTCAAAATTCTCTGTATCAAAAAGCAACCATTACTGTCTACAGATGAGTAATGTAAGAATTAAAGATCGTCTTCTCTGTTGAAAATCAAGGCGAGACGATGATCTGAACTTCAGTTGTGGGTTCCGGCAGATTTCCGATAATATATCTTCTCCAAGATCCGGTGGTCTTCGAAAATGAGTAGCCTGGTTGAGAGGCTTCGTGTTAGATCAGAACGAAGGCCAGTGTATAATCTCGATGAGTCAGACGAAGAGTTTGATTATAAGCATAAAAAACCTGGCTCAGCGCAAGAGATATTTGAAAGATTGGAGAGGGATGACAAGAAAGAAGATGCATGTCAAGCTTGTGGAGAAAGTGAGAATCTTCTCTCCTGTGAAACCTGTACATATGATTACCATCCTAAATGTCTATTTCCACCCTTGAAAGCTCCTCTCCCTAACAATTGGAGGTGCCCTGAATGTGTTAGCCCTCTAAGTGATATTGATAAAATATTGGATTGCGAAATGCGGCCTACTCTTGCCGGGGACAGCGATGCATCAAAGCTTGGTTCAAAGCAAATTTTTGTGAAACAATATCTTGTAAAGTGGAAGGGGTTATCTTATCTACATTGCACATGGGTGCCTGAGAAAGAATTTATAAAAGCTTTTAAAACGCATCCTCGCTTGAGGACTAAAGTAAACAATTTTCATAAGCAAATGTCTTCGAACAACAATGCCGAGGAAGATTACGTTGCTATTCGACCTGAATGGACAACAGTGGACCGGATTCTTGCTTGCAGGGGAAATGATGAAGAAAAAGAATATTTTGTGAAATATAAAGAACTTTCTTATGATGAATGTTATTGGGAATTTGAATCAGACATCTCTGCCTTTCAGCCTGAAATTGATAAGTTCCATAAAATTCAGTCTAGATCTCGTAAACAGTCTTCTAATAAGAACAAAAGCAGCCATGGTGATATTGGTGAGGTAAAGAAAAAACAAAAAGAATTCCAACAATATGATTGTAGTCCTCAGTTTCTTTCTGGAGGAACATTGCATCCATATCAGCTTGAAGGATTGAATTTCTTACGTTTTTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAGATGGGGCTTGGAAAAACCATACAGAGTATTGCCTTTTTAGCATCCCTTTATGAAGAGAATCTATCTCCCCACTTGGTGGTTGCTCCACTTTCAACGCTTCGAAATTGGGAACGTGAATTTGCTACATGGGCTCCTCATATGAATGTTGTTATGTATGTGGGCACTGCCCAAGCTCGTGCGGTTATAAGGGAATATGAATTTTACTTTCCAAGGAATCATAAGAAGGTGAAGAAAAAGAAATCTGGCCAAATTGTTACTGAAAGTAAGCAAGATAGAATCAAGTTTGATGTTCTGCTAACATCATATGAGATGATTAACTTTGATGTGGGAGTACTGAAGCCTATAAAATGGGAATCCTTGATTGTTGATGAAGGCCACCGGCTTAAGAATAAGGATTCAAAATTATTTTCTTCATTGAAACAGTTTTCAAGTAACCTTCGTGTACTCCTGACTGGAACTCCTCTTCAGAATAATCTTGATGAACTTTTCATGCTCATGCACTTCCTTGACGCGGGGAAGTTTGGAAGTCTAGAAGAGTTCCAAGAGGAGTTCAGAGATATCAATCAAGAGGAGCAAATCTTGAGGCTTCACAGAATGTTAGCTCCTCATCTCCTGAGAAGGGTCAAGAAAGACGTCATGAAGGACCTGCCCCCTAAAAAAGAACTTATTTTGCGTGTCGAACTAAGTAGTAAGCAGAAAGAATATTACAAAGCCATTTTAACTCGTAACTATCAATTATTAACTCGCCGTGGTGGTGCACAGATTTCTCTTATCAACGTTGTTATGGAATTGCGGAAGCTCTGTTGTCATGCTTACATGTTAGAAGGAGTTGAGCCAGATATAGAAGATGCTGAAGAAGCGTATAAACAGCTTTTGGAAACTTCCGGGAAGCTGCATTTGTTGGATAAGATGATGGTGAGACTCAAAGAACAAGGTCATAGAGTTCTCATATATACACAGTTTCAACACATGTTGGACTTGCTGGAAGATTATTGCAGTTACAAGAAATGGCAGTACGAAAGGATCGATGGCAAGGTTGGTGGAGCCGAAAGACAAATTCGAATAGATCGGTTCAATGCCAAGAATTCCTCCAGATTTTGTTTTCTGCTTTCTACTAGAGCTGGGGGTCTGGGAATAAATCTTGCAACTGCTGACACAGTTATCATATATGACAGTGATTGGAATCCCCATGCTGATCTACAGGCTATGGCTAGGGCTCATCGACTTGGGCAAACTAACAAGGTAATGATTTATAGGCTAGTAACACGAGGGACCATTGAAGAAAGGATGATGCAAATGACAAAGAAGAAGATGGTCTTAGAGCATTTGGTTGTCGGAAGGCTGAAGGCTCAAAACATTAATCAGGAAGAACTAGATGATATTATAAGGTATGGCTCGAAGGAATTATTTGCCGACGAGAATGACGAGGCAGGAAAATCTCGTCAAATTCATTATGATGATGCTGCAATAGACAGATTGCTGGACCGTGATCAAGTTAGAGATGATGATGCAACTGTTGATGAGGAAGAGGACGATGAATTTTTGAAGGCCTTTAAGGTGGCAAATTTTGAATATATTGATGAGGTGGAGGCTGCAGCAGAAGAGGCAGTGAAAAGGGCACCCGTGGAAAGTAAGCCTGTTGCAAGCAACGTGGAAAGAGCTAGCTATTGGGAAGAGTTGTTGAAGGATAAATATGAAGTGCATAAGATAGAAGAGTTTAATACGTTGGGTAAAGGAAAGAGGAGCCGTAAGCAGATGGTATCTGTTGAAGAAGATGACCTAGCTGGACTTGAAGATGTAAGCTCCGAGGGTGAGGAGGATGATAACTATGAAGCTGATTTGACTGAAGGTGAAGCAAATTCTCCTGATGTTCCTTCTGCGAGAAAGCCACATCGGAAGAAATCCCGTGTGGATAGCACCGAGCCACTTCCCTTAATGGAAGGGGAAGGAAGATCATTTAGAGTTCTTGGTTTCAACCAAAATCAAAGGGCTGCATTTGTGCAAAATTTAATGAGGTTTGGGGTTGGGGATTTTGACTGGAAGGAGTTTACATCTCGGATGAAGCAGAAGACTTATGAAGAAATAAAGGAATATGGGACTCTTTTCTTATCTCACATTGCTGAAGATATCACCGATTCCCCCAACTTTTCAGATGGCGTTCCCAAAGAAGGACTCAGAATACAAGATGTGCTAATCAGAATTGCAGTTTTACTCTTGATAAGGGATAAAGCGAAATTTGTCCCAGAAAATCCGAGTGCTCCACTTTTCACAGATGACATTTTATCCCGTTACCCAGGACTAAAAGGTGGAAAACATTGGAAGGAAGAACACGATAGATTGTTGCTGCTTGCTGTTCTGAAGCATGGCTACGGTAGATGGCAAGCGATTATTGATGACAAGGACCTCAAGATTCAAGAGGTGATTTGTCTGGAATTGAATCTGCCTGTCATAAACTTACCTGTTCCTGGACAAACTGGTTCTCTAGTTCAGAATGGTGGAAACATACCAAACACTGAAGCAGCTGGAATCGAGTCTAGGGAAAAGGAAAATGGTGGTGGAAACGATGCTTCATCTGATGTGCAGGGAGGAGGAACTGATACTGCTAACCAATCCCAGTTGTATCAAGATTCATCTATTTATTATCATTTTAGAGATATGCAGCGACGACAGGTTGAGTTCGTCAAGAAAAGGGTGCTTCTCTTGGAAAAAGGGCTGAATGCAGAGTACCAGAAAGAATACTTTGTAAGTTCTGAACTTCAAGGGTGACACGAAAGCAAATGATATTACAAGTGAAGATATTGAGAATGAATCCAAGGTTTCAAATTCGCCAGGTGCTAACGCTGTGGAGACTGATACTCAAAAGGTGGATCAGTTGCCTCAAGTAGATCCAATTT 4040 40.74 MSSLVERLRVRSERRPVYNLDESDEEFDYKHKKPGSAQEIFERLERDDKKEDACQACGESENLLSCETCTYDYHPKCLFPPLKAPLPNNWRCPECVSPLSDIDKILDCEMRPTLAGDSDASKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFIKAFKTHPRLRTKVNNFHKQMSSNNNAEEDYVAIRPEWTTVDRILACRGNDEEKEYFVKYKELSYDECYWEFESDISAFQPEIDKFHKIQSRSRKQSSNKNKSSHGDIGEVKKKQKEFQQYDCSPQFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLYEENLSPHLVVAPLSTLRNWEREFATWAPHMNVVMYVGTAQARAVIREYEFYFPRNHKKVKKKKSGQIVTESKQDRIKFDVLLTSYEMINFDVGVLKPIKWESLIVDEGHRLKNKDSKLFSSLKQFSSNLRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQILRLHRMLAPHLLRRVKKDVMKDLPPKKELILRVELSSKQKEYYKAILTRNYQLLTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIEDAEEAYKQLLETSGKLHLLDKMMVRLKEQGHRVLIYTQFQHMLDLLEDYCSYKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDRDQVRDDDATVDEEEDDEFLKAFKVANFEYIDEVEAAAEEAVKRAPVESKPVASNVERASYWEELLKDKYEVHKIEEFNTLGKGKRSRKQMVSVEEDDLAGLEDVSSEGEEDDNYEADLTEGEANSPDVPSARKPHRKKSRVDSTEPLPLMEGEGRSFRVLGFNQNQRAAFVQNLMRFGVGDFDWKEFTSRMKQKTYEEIKEYGTLFLSHIAEDITDSPNFSDGVPKEGLRIQDVLIRIAVLLLIRDKAKFVPENPSAPLFTDDILSRYPGLKGGKHWKEEHDRLLLLAVLKHGYGRWQAIIDDKDLKIQEVICLELNLPVINLPVPGQTGSLVQNGGNIPNTEAAGIESREKENGGGNDASSDVQGGGTDTANQSQLYQDSSIYYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFVSSELQG 1233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 77420812 77435509 - XM_039041827.1 Bhi09g02986 45603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02986 1233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 100 IPR013083 -
Bhi09g02986 1233 SMART helicmild6 638 722 IPR001650 -
Bhi09g02986 1233 Pfam PHD-finger 54 96 IPR019787 -
Bhi09g02986 1233 Gene3D - 278 528 IPR038718 -
Bhi09g02986 1233 Gene3D - 529 753 IPR027417 -
Bhi09g02986 1233 Gene3D - 196 241 - -
Bhi09g02986 1233 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Bhi09g02986 1233 ProSiteProfiles Chromo and chromo shadow domain profile. 192 251 IPR000953 -
Bhi09g02986 1233 SUPERFAMILY Chromo domain-like 66 176 IPR016197 -
Bhi09g02986 1233 CDD SF2_C_SNF 607 733 - -
Bhi09g02986 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 777 IPR027417 -
Bhi09g02986 1233 SUPERFAMILY Chromo domain-like 182 242 IPR016197 -
Bhi09g02986 1233 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Bhi09g02986 1233 Pfam CHD subfamily II, DUF1087 844 905 IPR009463 -
Bhi09g02986 1233 Pfam Helicase conserved C-terminal domain 610 722 IPR001650 -
Bhi09g02986 1233 MobiDBLite consensus disorder prediction 242 262 - -
Bhi09g02986 1233 Pfam CHD subfamily II, SANT-like domain 938 1070 IPR009462 GO:0003677|GO:0006338
Bhi09g02986 1233 SMART DUF1086_2 913 1073 IPR009462 GO:0003677|GO:0006338
Bhi09g02986 1233 SMART DUF1087_2 843 908 IPR009463 -
Bhi09g02986 1233 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Bhi09g02986 1233 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 156 IPR023780 -
Bhi09g02986 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 519 IPR027417 -
Bhi09g02986 1233 MobiDBLite consensus disorder prediction 1166 1182 - -
Bhi09g02986 1233 Pfam SNF2-related domain 306 585 IPR000330 GO:0005524|GO:0140658
Bhi09g02986 1233 CDD CD1_tandem 102 172 - -
Bhi09g02986 1233 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Bhi09g02986 1233 Gene3D - 101 195 - -
Bhi09g02986 1233 MobiDBLite consensus disorder prediction 893 957 - -
Bhi09g02986 1233 CDD CD2_tandem 190 241 - -
Bhi09g02986 1233 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Bhi09g02986 1233 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1060 - -
Bhi09g02986 1233 MobiDBLite consensus disorder prediction 904 926 - -
Bhi09g02986 1233 SMART chromo_7 99 162 IPR000953 -
Bhi09g02986 1233 SMART chromo_7 190 244 IPR000953 -
Bhi09g02986 1233 MobiDBLite consensus disorder prediction 1156 1182 - -
Bhi09g02986 1233 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1060 - -
Bhi09g02986 1233 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Bhi09g02986 1233 Gene3D - 1040 1215 - -
Bhi09g02986 1233 SMART PHD_3 53 96 IPR001965 -
Bhi09g02986 1233 SMART ultradead3 282 495 IPR014001 -
Bhi09g02986 1233 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02986 K11643 CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-] - csv:101214984 2279.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02986 Bhi-Chr9:77420812 Bhi10g00268 Bhi-Chr10:5998378 2.39E-174 dispersed
Bhi09g02985 Bhi-Chr9:77419509 Bhi09g02986 Bhi-Chr9:77420812 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g521 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g02986 . . . . . . . . . . . . . . . . Cme07g00110
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009048 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1998 PF00176 SNF2_N 2.40E-63 CL0023 Bhi TR