Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g02991 ATATCATAGAATGTTTTCAAGAACAGAGTCGAGCATTCTCCAAGGTTCCATTGCTTTATCGACAAGCCGGCGTTTATCATCTTCGTCCCTCTCTCTTTGTAATCTTTTCTCTTTGATCGGAAAAAAAATGGCGACCAGAAGAGTTTCGAAGCTCACCAGGCCTGCTTTAGCCGCCATTGACGCCACCAAGCTTTCTCATTCTCGCTCCATTTTCTCTTCTTCGCCTGCACTGTCGCGTTCTTCGTCTTCTTCTCTTAGTAATTCCATCGGTCCCTCTTCTGTTGCAAAGATTTTTGGTTCCAGACCTGTCAATGGCGCTTCCATGGCGTCGGCCAAGTATTTGGCTACGATTTTCACTCGGAATTTCCATTCTACGCTTCCTTCTCGCTACTCTGCCACGGCTTCTTCTCAGATAAATCAGACAGACTTCACTGAGATGGCATGGGAAGGCATAGTTGGGGCAGTTGATACTGCACGGGCGAATAAACAACAAGTTGTGGAGAGTGAACATTTAATGAAAACACTTCTTGAACAGAAGGATGGCCTTGCAAGGAGAATATTTTCTAAGGCCGGACTTGACAATTCATCAGTTTTGCAGGCTACAGTTGATTTTATATCTCAACAACCTAAGGTAACGGGCGAAACTAGTGGTCCAATAATAGGCACCCATCTAGGTTTGATTTTGGACAATGCTCGAAAACATAAAAAAGAAATGGGAGACGATTTTCTTTCTGTGGAACATTTTGTGTTAGCCTTCCATTCAGATAAGAGATTTGGGCAGCAACTATTTAAGAACTTGCAACTTAGTGAAAAGGACTTGAAGGATGCTGTTCAGGCTGTTCGTGGAAATCAGAGGGTGACTGATCAAAATCCTGAAGGAAAATATGAGGCTCTTGACAAGTATGGGACTGACTTAACTGAACTTGCTAGACGCGGTAAGCTCGATCCAGTCATAGGAAGAGATGATGAAATAAGACGATGCATCCAAATTCTATCGAGGAGAACTAAAAACAATCCCGTGATCATTGGTGAGCCAGGTGTTGGGAAAACTGCAATCGCCGAAGGATTAGCTCAACGAATTGTGCGTGGGGATGTTCCAGAACCTTTGTTGAATAGAAAGTTAATATCTCTGGACATGGGTTCACTGGTTGCTGGTGCAAAATTCCGTGGAGATTTCGAGGAAAGATTGAAGGCCGTGCTAAAGGAAGTCACTGCCTCAAATGGGCAAATTATCTTGTTCATAGACGAAATTCATACAGTTGTTGGTGCAGGGGCTACTGGTGGTGCGATGGATGCTGGCAACCTGTTGAAACCTATGCTTGGTCGAGGTGAACTACGATGTATCGGTGCAACTACATTGAAGGAGTATAGAAAATACATTGAGAAAGATCCTGCACTCGAACGTAGATTTCAGCAAGTATTTTGTGGCCAACCATCTGTTGAAGATACAATCTCTATTCTTCGTGGGTTACGAGAGCGATATGAGCTACATCATGGTGTAAAGATATCTGATAGTGCACTTGTATCAGCAGCCGTTTTAGCAGGCAGATACATCACAGAACGGTTTTTGCCTGACAAAGCTATTGATCTTGTTGATGAAGCTGCTGCAAAGTTGAAGATGGAGATTACTTCTAAGCCTACTGAGTTGGATGAGATTGACCGTGCGGTTTTGAAATTGGAGATGGAGAAGCTCTCCTTAAAAAATGACACAGATAAAGCCAGCAAAGAAAGGTTAAGCAAATTAGAGCAAGATCTTAGTTCACTTAAACAAAAGCAAAAAGAGTTGACTGAACAATGGGATCGCGAAAAATCTTTCATGACCCGTATACGATCTATCAAGGAAGAGATTGATAGAGTTAATCTCGAGATGGAAGCGGCTGAAAGAGAATTTGATTTGAATCGGGCTGCTGAGCTCAAGTATGGAACTCTAATATCCCTTCGCCAGCAATTAGAAGAGGCTGAAAAGAATCTACAGGACTTCCGGAAGTCTGGAATTTCTTTGCTTCGTGAAGAGGTCACAGATCTTGATATTGCTGAGATTGTAAGCAAATGGACGGGCATACCTTTGTCCAACCTTCAACAATCCGAGAGAGACAAACTAGTTTTACTTGAACAAGTACTCCATCAGAGGGTGGTTGGTCAAGATATTGCAGTAAAATCAGTTGCAGATGCCATTCGTCGTTCAAGAGCAGGACTCTCTGATCCAAATCGACCTATAGCCAGCTTCATGTTTATGGGCCCAACGGGTGTGGGGAAAACTGAGCTTGCAAAAGCTTTGGCTGGGTATCTTTTTAACACTGAGAATGCTCTTGTTAGGATTGATATGAGTGAATACATGGAGAAACATGCAGTGTCTCGCTTGGTAGGGGCACCACCTGGTTATGTTGGTTATGAAGAAGGCGGCCAGCTGACTGAAGTGGTTCGTCGAAGGCCTTATTCTGTGGTACTTTTTGATGAGATTGAGAAGGCACATCATGATGTCTTCAACATTTTGCTACAATTGTTGGATGATGGGAGGATAACGGATTCTCAGGGTCGGACCATTAGTTTCACAAATTGTGTCATGATAATGACATCAAACATTGGTTCTCACTACATCCTTGAAACTCTCAGTAACACGAAAGATAGTAAAGATGCAGTTTATGAGTTGATGAAAAAACAAGTTATTGGATTGGCAAGGCAAACTTTCCGGCCAGAGTTTATGAACCGAATTGATGAATATATCGTCTTTCAACCTTTGGACGCCACCCAAATATGCAAGATTGTTGAAATACAGATCAAACTACTACGTGATAGGCTTAAACAGAAGAACATTAATCTTCATTACACTGAAGAAGCTCTCGAGCTTTTAGGGACATTGGGGTTTGACCCTAATTATGGTGCAAGGCCAGTTAAAAGAGTAATACAACAATTAGTCGAAAATGAGATAGCGATGCAAGTTTTGAGAGGCGATTTTCAAGAAGATGACTCGATCATTCTCGATGTCGATAAATCTTCATTTGCCAAAGACTTGCCTCCCCAAAAAAGATTGTGCATCAAGAAAATAAACAGCAATTCTACTTCGGAGGCTATGGTTGCCAATGACTGATTTCACTCGTAGGATTGTCATATGGTTAATAGTAGGTGATGATAGTTTAGTTTTCACTGATTTCTTTACACTGACATGTTTGAATTTTGGGTATATGAGTTTTCAAAGAATAGTGAAGTCAACAAATTTTTTACTATATCAGTAAGTTTGTTATTTTAAAGCATATAAATCTTGTTCGGTGGGGTAGGAAAAAAGTTAGAACCAAAACTGTTCTTGTGTAGTTTTTAGAAAGTGTCCAAATTTAATGATGATTTCCTGTGTGAATGAGAATAATTTGTTATTCTTGTCATCA 3380 41.18 MFSRTESSILQGSIALSTSRRLSSSSLSLCNLFSLIGKKMATRRVSKLTRPALAAIDATKLSHSRSIFSSSPALSRSSSSSLSNSIGPSSVAKIFGSRPVNGASMASAKYLATIFTRNFHSTLPSRYSATASSQINQTDFTEMAWEGIVGAVDTARANKQQVVESEHLMKTLLEQKDGLARRIFSKAGLDNSSVLQATVDFISQQPKVTGETSGPIIGTHLGLILDNARKHKKEMGDDFLSVEHFVLAFHSDKRFGQQLFKNLQLSEKDLKDAVQAVRGNQRVTDQNPEGKYEALDKYGTDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLLNRKLISLDMGSLVAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATGGAMDAGNLLKPMLGRGELRCIGATTLKEYRKYIEKDPALERRFQQVFCGQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLAGRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLEQDLSSLKQKQKELTEQWDREKSFMTRIRSIKEEIDRVNLEMEAAEREFDLNRAAELKYGTLISLRQQLEEAEKNLQDFRKSGISLLREEVTDLDIAEIVSKWTGIPLSNLQQSERDKLVLLEQVLHQRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTISFTNCVMIMTSNIGSHYILETLSNTKDSKDAVYELMKKQVIGLARQTFRPEFMNRIDEYIVFQPLDATQICKIVEIQIKLLRDRLKQKNINLHYTEEALELLGTLGFDPNYGARPVKRVIQQLVENEIAMQVLRGDFQEDDSIILDVDKSSFAKDLPPQKRLCIKKINSNSTSEAMVAND 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 77634563 77640649 - XM_039042440.1 Bhi09g02991 45608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g02991 1025 Pfam AAA lid domain 476 578 IPR041546 -
Bhi09g02991 1025 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 140 996 IPR017730 GO:0005737|GO:0009408|GO:0042026
Bhi09g02991 1025 ProSitePatterns Chaperonins clpA/B signature 1. 428 440 IPR018368 GO:0005524
Bhi09g02991 1025 PANTHER ATP-DEPENDENT CLP PROTEASE 113 1017 - -
Bhi09g02991 1025 Coils Coil 640 667 - -
Bhi09g02991 1025 CDD AAA 709 857 - -
Bhi09g02991 1025 Coils Coil 568 595 - -
Bhi09g02991 1025 PANTHER BNAC09G42450D PROTEIN 113 1017 - -
Bhi09g02991 1025 Pfam Clp amino terminal domain, pathogenicity island component 153 202 IPR004176 -
Bhi09g02991 1025 Pfam Clp amino terminal domain, pathogenicity island component 228 279 IPR004176 -
Bhi09g02991 1025 ProSitePatterns Chaperonins clpA/B signature 2. 769 787 IPR028299 -
Bhi09g02991 1025 Coils Coil 546 566 - -
Bhi09g02991 1025 Pfam AAA domain (Cdc48 subfamily) 734 903 IPR003959 GO:0005524|GO:0016887
Bhi09g02991 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 683 IPR027417 -
Bhi09g02991 1025 SMART AAA_5 735 911 IPR003593 -
Bhi09g02991 1025 SMART AAA_5 332 476 IPR003593 -
Bhi09g02991 1025 Gene3D - 910 1005 - -
Bhi09g02991 1025 Gene3D - 283 476 IPR027417 -
Bhi09g02991 1025 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 739 757 IPR001270 GO:0005524
Bhi09g02991 1025 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 784 802 IPR001270 GO:0005524
Bhi09g02991 1025 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 813 831 IPR001270 GO:0005524
Bhi09g02991 1025 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 846 860 IPR001270 GO:0005524
Bhi09g02991 1025 Pfam ATPase family associated with various cellular activities (AAA) 338 470 IPR003959 GO:0005524|GO:0016887
Bhi09g02991 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 684 994 IPR027417 -
Bhi09g02991 1025 CDD AAA 315 475 - -
Bhi09g02991 1025 Gene3D - 135 282 IPR036628 -
Bhi09g02991 1025 Coils Coil 606 626 - -
Bhi09g02991 1025 Pfam C-terminal, D2-small domain, of ClpB protein 910 988 IPR019489 -
Bhi09g02991 1025 Gene3D - 687 908 IPR027417 -
Bhi09g02991 1025 ProSiteProfiles Clp repeat (R) domain profile. 135 280 IPR004176 -
Bhi09g02991 1025 Gene3D - 477 682 IPR027417 -
Bhi09g02991 1025 SUPERFAMILY Double Clp-N motif 139 290 IPR036628 -
Bhi09g02991 1025 SMART ClpB_D2_small_2 910 997 IPR019489 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g02991 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101214262 1774.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01100 Bhi-Chr8:35445870 Bhi09g02991 Bhi-Chr9:77634563 0 dispersed
Bhi09g01849 Bhi-Chr9:50784131 Bhi09g02991 Bhi-Chr9:77634563 0 dispersed
Bhi09g02991 Bhi-Chr9:77634563 Bhi09g02993 Bhi-Chr9:77634563 0 dispersed
Bhi09g02991 Bhi-Chr9:77634563 Bhi09g02992 Bhi-Chr9:77634563 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g520 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00011 . . . . . . . . . . . . . . . Bhi09g02991 Tan01g3577 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007844 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 35