Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03002 TTCTTCACAAAAAACCCCCAAATTTTCTTCTTAATTTCTTCTAATTCTTCCTTTCATGCAGCAATAAAAAAAAAATCTCAACCTTTGTTTTCTTTTTTAATCTGAAATTACTAATATATATATATATATATATATAATGGATATTTTTTTGGACCTTAATGTGGATCCTAATTCTTCTTATGCTAATTCAACCATGGATGAGGCTATTCATTTAACACAGAAAAGAGATCAGTTTGAAGGAGAAAGCTATGGAGATAAAGAAAAACTCTCACTGAGCTTGGCAAATAAGGGAAGTGATTCAAGCGTGACATTGGAACAAGAGTTGGATAGAAAAATCCAAGAGAATGGGAAGCTAAGTCAAATGCTAAGAATAATGTATGAGAAATACATTAATCTTCAGAAGCAAGTGATGTATTTGTTGAGCAACCAAAAGCAAAACCCAGAAATGGAAGGTGTTTGTTCAAGGAAGAGAAGGGCAGAAGGAGAAGAAGATTATGAGAACTTTGAAGGGATTTGCAGCACAAGAGATGAAGATTTCAACAGGTGGCTTAAGAGGCCAAGACTAAATGGAAACTCAAAAGTTTCTAAGGTTTTTGTGCAAAAAGATGCATCAGATCCAAGCTTGGTGGTGAAAGATGGGTATCAATGGAGGAAGTATGGGCAAAAAGTCACAAGAGACAACCCTTCTCCAAGAGCTTACTTCAAATGCTCCTCTGCACCAAATTGTCCTGTCAAAAAGAAGGTGCAAAGAAGTTTGGAAGATCCAACAATTTTGGTGGCCACATACGAAGGAGAACACAGCCATGCCAGCCATTTTCAAACTGAGCTTTCTTTAAGGTCTATCAATGGCGGGAAAAGTAGCGCAGTCCCGGTCTTAGCGACGATCAAGCCGTCGTGCGCCACCGTGACCCTCGATTTGATTCACGAAGACGGACTGTTTAAGAGTCCTAAAGATTACGTGTCGGCGGAGTCGGCGGAGGCAGCGGTCTGGCAAGAGTTTTTGGTACAACAAATGGCCTCTTCTTTGAAGAAGGATCCTGAATTTGCTGGCATTGTTGCTGGTGCCATTTCAGGCAAGGTTTTGGGGAACCAAACAAACAGAGAATAAACCCTAAAATCCTAAAGGCCTTGTGTTCCACATTTTCTTTAATTTCTTTTAAGGTACCATCTTAGCCTTTTGTGAATATTTGTTTGTTTGGAATTAGACAACTTTAATTGGCTGGGTTACAAATCATGTGTTAATTAAGTGCTCTACTACTCAATTACCAAAGATTTTAAGGACAGTTTCAGTTAATTAATAAAGATCAATTTTCCTCAA 1318 38.16 MDIFLDLNVDPNSSYANSTMDEAIHLTQKRDQFEGESYGDKEKLSLSLANKGSDSSVTLEQELDRKIQENGKLSQMLRIMYEKYINLQKQVMYLLSNQKQNPEMEGVCSRKRRAEGEEDYENFEGICSTRDEDFNRWLKRPRLNGNSKVSKVFVQKDASDPSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSSAPNCPVKKKVQRSLEDPTILVATYEGEHSHASHFQTELSLRSINGGKSSAVPVLATIKPSCATVTLDLIHEDGLFKSPKDYVSAESAEAAVWQEFLVQQMASSLKKDPEFAGIVAGAISGKVLGNQTNRE 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 77900817 77904480 + XM_039041178.1 Bhi09g03002 45619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03002 323 Gene3D WRKY domain 148 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bhi09g03002 323 SUPERFAMILY WRKY DNA-binding domain 163 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bhi09g03002 323 Pfam WRKY DNA -binding domain 166 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bhi09g03002 323 SMART WRKY_cls 165 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bhi09g03002 323 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 7 319 IPR044810 GO:0003700
Bhi09g03002 323 ProSiteProfiles WRKY domain profile. 160 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bhi09g03002 323 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR-RELATED 7 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03002 - - - csv:101213537 610.142
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi04g00045 Bhi09g03002 CCT
Bhi04g00045 Bhi09g03002 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00046 Bhi-Chr4:1407714 Bhi09g03002 Bhi-Chr9:77900817 1.09E-30 dispersed
Bhi09g03002 Bhi-Chr9:77900817 Bhi09g03004 Bhi-Chr9:77900910 0 dispersed
Bhi09g03002 Bhi-Chr9:77900817 Bhi09g03003 Bhi-Chr9:77900820 0 tandem
Bhi11g01465 Bhi-Chr11:42394243 Bhi09g03002 Bhi-Chr9:77900817 9.92E-67 transposed
Bhi04g00045 Bhi-Chr4:1381863 Bhi09g03002 Bhi-Chr9:77900817 8.52E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g508 . . Bda01g00763 . . . . . . . . . . . . . . Bhi04g00045 . . . . . Lcy13g1830 . . . . . . . . . . . . . . . . . . . . . . . Sed13g1970 . . . . . . . . Bhi09g03002 Tan01g3570 Cmetu07g0299 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005027 2 3 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1999 PF03106 WRKY 2.10E-23 CL0274 Bhi TF