Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03003 TTCACAAAAAACCCCCAAATTTTCTTCTTAATTTCTTCTAATTCTTCCTTTCATGCAGCAATAAAAAAAAAATCTCAACCTTTGTTTTCTTTTTTAATCTGAAATTACTAATATATATATATATATATATATAATGGATATTTTTTTGGACCTTAATGTGGATCCTAATTCTTCTTATGCTAATTCAACCATGGATGAGGCTATTCATTTAACAAAAAGAGATCAGTTTGAAGGAGAAAGCTATGGAGATAAAGAAAAACTCTCACTGAGCTTGGCAAATAAGGGAAGTGATTCAAGCGTGACATTGGAACAAGAGTTGGATAGAAAAATCCAAGAGAATGGGAAGCTAAGTCAAATGCTAAGAATAATGTATGAGAAATACATTAATCTTCAGAAGCAAGTGATGTATTTGTTGAGCAACCAAAAGCAAAACCCAGAAATGGAAGGTGTTTGTTCAAGGAAGAGAAGGGCAGAAGGAGAAGAAGATTATGAGAACTTTGAAGGGATTTGCAGCACAAGAGATGAAGATTTCAACAGGTGGCTTAAGAGGCCAAGACTAAATGGAAACTCAAAAGTTTCTAAGGTTTTTGTGCAAAAAGATGCATCAGATCCAAGCTTGGTGGTGAAAGATGGGTATCAATGGAGGAAGTATGGGCAAAAAGTCACAAGAGACAACCCTTCTCCAAGAGCTTACTTCAAATGCTCCTCTGCACCAAATTGTCCTGTCAAAAAGAAGGTGCAAAGAAGTTTGGAAGATCCAACAATTTTGGTGGCCACATACGAAGGAGAACACAGCCATGCCAGCCATTTTCAAACTGAGCTTTCTTTAAGGTCTATCAATGGCGGGAAAAGTAGCGCAGTCCCGGTCTTAGCGACGATCAAGCCGTCGTGCGCCACCGTGACCCTCGATTTGATTCACGAAGACGGACTGTTTAAGAGTCCTAAAGATTACGTGTCGGCGGAGTCGGCGGAGGCAGCGGTCTGGCAAGAGTTTTTGGTACAACAAATGGCCTCTTCTTTGAAGAAGGATCCTGAATTTGCTGGCATTGTTGCTGGTGCCATTTCAGGCAAGGTTTTGGGGAACCAAACAAACAGAGAATAAACCCTAAAATCCTAAAGGCCTTGTGTTCCACATTTTCTTTAATTTCTTTTAAGGTACCATCTTAGCCTTTTGTGAATATTTGTTTGTTTGGAATTAGACAACTTTAATTGGCTGGGTTACAAATCATGTGTTAATTAAGTGCTCTACTACTCAATTACCAAAGATTTTAAGGACAGTTTCAGTTAATTAATAAAGATCAATTTTCCTCAA 1312 38.11 MDIFLDLNVDPNSSYANSTMDEAIHLTKRDQFEGESYGDKEKLSLSLANKGSDSSVTLEQELDRKIQENGKLSQMLRIMYEKYINLQKQVMYLLSNQKQNPEMEGVCSRKRRAEGEEDYENFEGICSTRDEDFNRWLKRPRLNGNSKVSKVFVQKDASDPSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSSAPNCPVKKKVQRSLEDPTILVATYEGEHSHASHFQTELSLRSINGGKSSAVPVLATIKPSCATVTLDLIHEDGLFKSPKDYVSAESAEAAVWQEFLVQQMASSLKKDPEFAGIVAGAISGKVLGNQTNRE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 77900820 77904480 + XM_039041179.1 Bhi09g03003 45620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03003 322 SUPERFAMILY WRKY DNA-binding domain 162 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bhi09g03003 322 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR-RELATED 6 318 - -
Bhi09g03003 322 Gene3D WRKY domain 147 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bhi09g03003 322 SMART WRKY_cls 164 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bhi09g03003 322 ProSiteProfiles WRKY domain profile. 159 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bhi09g03003 322 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 6 318 IPR044810 GO:0003700
Bhi09g03003 322 Pfam WRKY DNA -binding domain 165 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03003 - - - csv:101213537 606.675
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi04g00046 Bhi09g03003 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g03003 Bhi-Chr9:77900820 Bhi11g01465 Bhi-Chr11:42394243 2.89E-56 dispersed
Bhi09g03002 Bhi-Chr9:77900817 Bhi09g03003 Bhi-Chr9:77900820 0 tandem
Bhi09g03003 Bhi-Chr9:77900820 Bhi09g03004 Bhi-Chr9:77900910 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g507 . . . . . . . . . . . . . . Sed11g1143 . . Bhi04g00046 Tan02g2760 Cmetu03g1247 . Hepe10g0218 . Lcy13g1831 . . . . . . . . . . . . . . . . . . . . . . . Sed05g1739 . . . . . . . . Bhi09g03003 Tan01g3569 . . Hepe01g1969 Mch11g0506 . . . . . . . . . . . Cme07g00117
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005027 2 3 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2000 PF03106 WRKY 2.10E-23 CL0274 Bhi TF