Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03004 TTTTTAATCTGAAATTACTAATATATATATATATATATAATGGATATTTTTTTGGACCTTAATGTGGATCCTAATTCTTCTTATGCTAATTCAACCATGGATGAGGCTATTCATTTAACAAAAAGAGATCAGTTTGAAGGAGAAAGCTATGGAGATAAAGAAAAACTCTCACTGAGCTTGGCAAATAAGGGAAGTGATTCAAGCGTGACATTGGAACAAGAGTTGGATAGAAAAATCCAAGAGAATGGGAAGCTAAGTCAAATGCTAAGAATAATGTATGAGAAATACATTAATCTTCAGAAGCAAGTGATGTATTTGTTGAGCAACCAAAAGCAAAACCCAGAAATGGAAGGTGTTTGTTCAAGGAAGAGAAGGGCAGAAGGAGAAGAAGATTATGAGAACTTTGAAGGGATTTGCAGCACAAGAGATGAAGATTTCAACAGGTGGCTTAAGAGGCCAAGACTAAATGGAAACTCAAAAGTTTCTAAGGTTTTTGTGCAAAAAGATGCATCAGATCCAAGCTTGGTGGTGAAAGATGGGTATCAATGGAGGAAGTATGGGCAAAAAGTCACAAGAGACAACCCTTCTCCAAGAGCTTACTTCAAATGCTCCTCTGCACCAAATTGTCCTGTCAAAAAGAAGGTGCAAAGAAGTTTGGAAGATCCAACAATTTTGGTGGCCACATACGAAGGAGAACACAGCCATGCCAGCCATTTTCAAACTGAGCTTTCTTTAAGGTCTATCAATGGCGGGAAAAGTAGCGCAGTCCCGGTCTTAGCGACGATCAAGCCGTCGTGCGCCACCGTGACCCTCGATTTGATTCACGAAGACGGACTGTTTAAGAGTCCTAAAGATTACGTGTCGGCGGAGTCGGCGGAGGCAGCGGTCTGGCAAGAGTTTTTGGTACAACAAATGGCCTCTTCTTTGAAGAAGGATCCTGAATTTGCTGGCATTGTTGCTGGTGCCATTTCAGGCAAGGTTTTGGGGAACCAAACAAACAGAGAATAAACCCTAAAATCCTAAAGGCCTTGTGTTCCACATTTTCTTTAATTTCTTTTAAGGTACCATCTTAGCCTTTTGTGAATATTTGTTTGTTTGGAATTAGACAACTTTAATTGGCTGGGTTACAAATCATGTGTTAATTAAGTGCTCTACTACTCAATTACCAAAGATTTTAAGGACAGTTTCAGTTAATTAATAAAGATCAATTTTCCTCAA 1218 39.0 MDIFLDLNVDPNSSYANSTMDEAIHLTKRDQFEGESYGDKEKLSLSLANKGSDSSVTLEQELDRKIQENGKLSQMLRIMYEKYINLQKQVMYLLSNQKQNPEMEGVCSRKRRAEGEEDYENFEGICSTRDEDFNRWLKRPRLNGNSKVSKVFVQKDASDPSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSSAPNCPVKKKVQRSLEDPTILVATYEGEHSHASHFQTELSLRSINGGKSSAVPVLATIKPSCATVTLDLIHEDGLFKSPKDYVSAESAEAAVWQEFLVQQMASSLKKDPEFAGIVAGAISGKVLGNQTNRE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 77900910 77904480 + XM_039041180.1 Bhi09g03004 45621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03004 322 SUPERFAMILY WRKY DNA-binding domain 162 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bhi09g03004 322 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR-RELATED 6 318 - -
Bhi09g03004 322 Gene3D WRKY domain 147 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bhi09g03004 322 SMART WRKY_cls 164 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bhi09g03004 322 ProSiteProfiles WRKY domain profile. 159 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bhi09g03004 322 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 6 318 IPR044810 GO:0003700
Bhi09g03004 322 Pfam WRKY DNA -binding domain 165 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03004 - - - csv:101213537 606.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g03002 Bhi-Chr9:77900817 Bhi09g03004 Bhi-Chr9:77900910 0 dispersed
Bhi09g03004 Bhi-Chr9:77900910 Bhi11g01465 Bhi-Chr11:42394243 2.89E-56 dispersed
Bhi09g03003 Bhi-Chr9:77900820 Bhi09g03004 Bhi-Chr9:77900910 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g459 . Blo12g01081 Bda01g00738 . . Bpe02g00568 Bma04g00063 . . . Cma01g01497 . . . . . Cpe06g00347 . . . . . . . Cla05g01748 Cam05g1861 Cec05g1873 Cco05g1936 Clacu05g1852 Cmu05g1733 Cre05g1865 Cone4ag1800 Cone7ag1708 . . Lsi04g02141 Csa03g04345 Chy04g00357 . . . . . . Bpe04g00051 . . . Cmo01g01553 Cmo09g00475 Cma09g00468 . . . . Cpe02g00458 Bhi09g03004 . . . . . . . . . . . . . . . . Cme07g00118
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005027 2 3 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 0 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2001 PF03106 WRKY 2.10E-23 CL0274 Bhi TF