Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03050 ATGGTCTGCGAGATGGAGACTGGTGTTATTGAAGATATGGACATCGAAGCGGTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGCTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATACCTTGCAAAGCAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATCCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAAGCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTTGTGGTTCAAAGTAAGAGAGTTGAAATTGATGCAGAGTATGATACAGTGACATACTGGAAGCAACGAGCCTTGGATCTGGAAAAGTTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCCGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCCTCACCAGTTGAGGAGTTATCACAGATTCTTAAAAGAGCCGACAATTTCTTGCATTTTGTTCTACAGAATGCACCAGTTGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTCAGTGGTGCTGGTGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTACCTGCAAAGAGGGAGATTCAGTTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGTGAGGAGATTGCAGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAAAAACATCTGTTAGATGTTATGTTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTGCTACAGACTGCTGCCGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATCCGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCTTATCCACCCATTGGGACAGGAGAAGAATGCCATAAGAAATCAACTGCTGATAACTCAACAGTTCCGGTACATGGTTTGCAAGAAGGAACATGTCTTCCAGCCTCTCAGAATGGCTTGAGTGGCCAAAAACACGGCGACAGAAATAATTTGCATTGTGATGCACCAGGAACCCCAAGCAAGAGTGAAACCACAATGAATGGAAACAGAGAAAACAAATCTTGTTCAACTGAAACGACGGTATGGATATGCTGTGATGTATATGACACAGGAATTGGTATACCAGAAAATGCGTTACCAACCCTTTTTAAGAGGTACATGCAAGCCAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGCTGGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCATGGATCTACTTTTACATTTGTACTGCCATACAAGGTTTCAACCACATGTAGTCCTTCCGAAGATTCTGATGAGCTCTCAGACGAAGAGTCTACAAACGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCTCACAGTTTCAGTTCGCTATCATCTTCTAATGGATCCACTAGGATCCCAAACTCATTGTTGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGCTTAGCTGAAGGTGGTCCTTATCCTATTACCTCAAACAACATCGATGCGCGTTACGCCAATGCCGCTGCTGTAACCTCAAGCGAATCACAATGCTCGTCAAGTCAGATAAACTCAAATCTTGATAACCAAAACCAACCAGACACAAATGCTCGGTTGCAAAATATCAGTGGCATGAATTCCCTTCCCAGATCAGAAACAACAAAGCAACAAGATAGACCGGAAAAACAAAGTAATAAACTTCAAAAAACAGAGCAGCGGAAAGAAAGATCCGATACAAGTAATCATTGCAGAAATAGTAGTTGTGGTTCTGAAGTAACAATGACATTGGAACCTAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGACTCAGTCTATGATGAAGAAGTTCGGCCAAAAAATTGACGTTGTAACCAACGGCATTGAAGCTGTTCGTGCAGTTCAAAGGCGTTCTTATGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGATAATACGATCATTTGAGGAAACAGGAAGCTGGGAGGCAGCTGTAAATGCTGGAATACACCCAACTACACCTTCTTGGATTCCTTCCTCCTCCCCCAACAGGATGCCCATCATTGCTATGACGGCGAATTCAATGTCAGAAAGTGCAGAAGAGTGTTATGAAAATGGGATGGACTCGTTCGTATCAAAGCCAATCACGTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTGCCACAGCCACAACCACAACCTCCCTTGTAAATTTGTATGCTTTGTTTCAGAGAAGGTAATGGTAGAAGAAATCAGTTCAGTAGGAAAGTTTTGTAATCTTCCTTTTCCCTCCCTTTTTTTTTTTTGGGTAAAGTAATGTAATCAGTGTAACATATGTTCTTACCCCTACTACTACCACCTGCCCAATTTGTAAATTGTACAGAAGAAAGCTGTCGTT 3184 41.08 MVCEMETGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEEACDIWQDIPRRKTDFVVQSKRVEIDAEYDTVTYWKQRALDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQKHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADNSTVPVHGLQEGTCLPASQNGLSGQKHGDRNNLHCDAPGTPSKSETTMNGNRENKSCSTETTVWICCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSEDSDELSDEESTNDEMTEGFFQFQPHSFSSLSSSNGSTRIPNSLLHTTGYPTSTKLNGLAEGGPYPITSNNIDARYANAAAVTSSESQCSSSQINSNLDNQNQPDTNARLQNISGMNSLPRSETTKQQDRPEKQSNKLQKTEQRKERSDTSNHCRNSSCGSEVTMTLEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRIIRSFEETGSWEAAVNAGIHPTTPSWIPSSSPNRMPIIAMTANSMSESAEECYENGMDSFVSKPITFQKLKECLERYLPQPQPQPPL 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 78962115 78971366 - XM_039043433.1 Bhi09g03050 45667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03050 998 Pfam Response regulator receiver domain 850 917 IPR001789 GO:0000160
Bhi09g03050 998 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Bhi09g03050 998 Gene3D - 844 989 - -
Bhi09g03050 998 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Bhi09g03050 998 MobiDBLite consensus disorder prediction 767 803 - -
Bhi09g03050 998 Gene3D PAS domain 205 335 - -
Bhi09g03050 998 MobiDBLite consensus disorder prediction 804 831 - -
Bhi09g03050 998 SUPERFAMILY CheY-like 848 995 IPR011006 -
Bhi09g03050 998 Gene3D - 435 676 IPR036890 -
Bhi09g03050 998 MobiDBLite consensus disorder prediction 569 587 - -
Bhi09g03050 998 Gene3D - 336 434 - -
Bhi09g03050 998 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 990 - -
Bhi09g03050 998 Coils Coil 181 208 - -
Bhi09g03050 998 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Bhi09g03050 998 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Bhi09g03050 998 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Bhi09g03050 998 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Bhi09g03050 998 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Bhi09g03050 998 Coils Coil 92 112 - -
Bhi09g03050 998 SMART HKATPase_4 482 672 IPR003594 -
Bhi09g03050 998 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Bhi09g03050 998 Coils Coil 342 362 - -
Bhi09g03050 998 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Bhi09g03050 998 MobiDBLite consensus disorder prediction 549 587 - -
Bhi09g03050 998 MobiDBLite consensus disorder prediction 767 840 - -
Bhi09g03050 998 ProSiteProfiles Response regulatory domain profile. 849 989 IPR001789 GO:0000160
Bhi09g03050 998 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 990 - -
Bhi09g03050 998 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Bhi09g03050 998 CDD REC_hyHK_CKI1_RcsC-like 850 985 - -
Bhi09g03050 998 SMART REC_2 848 985 IPR001789 GO:0000160
Bhi09g03050 998 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03050 - - - csv:101219807 1758.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g03050 Bhi-Chr9:78962115 Bhi07g00162 Bhi-Chr7:8809596 8.41E-60 dispersed
Bhi09g03050 Bhi-Chr9:78962115 Bhi09g03051 Bhi-Chr9:78962302 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g00162 . 20 1005 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1352.0
Bhi12g00966 . 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00965 CCT 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00967 . 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00964 . 1 833 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1140.2
Bhi05g01444 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi05g01443 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi05g01445 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi12g02461 . 58 1003 Histidine Kinase Gene Family AT2G01830 53.6 1.2e-272 937.2
Bhi12g02460 . 58 1003 Histidine Kinase Gene Family AT2G01830 53.6 1.2e-272 937.2
Bhi10g01319 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi10g01320 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi10g01318 . 286 1241 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi09g03051 . 1 989 Histidine Kinase Gene Family AT5G10720 57.6 1.7e-294 1009.6
Bhi09g03050 . 1 989 Histidine Kinase Gene Family AT5G10720 57.6 1.7e-294 1009.6
Bhi04g01236 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.6 0.0e+00 1825.1
Bhi04g01235 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.6 0.0e+00 1825.1
Bhi04g01239 . 3 1141 Histidine Kinase Gene Family AT1G09570 71.8 0.0e+00 1642.1
Bhi05g01474 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.0 0.0e+00 1211.4
Bhi05g01475 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.0 0.0e+00 1211.4
Bhi01g01090 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.5 0.0e+00 1198.0
Bhi01g01090 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.6 0.0e+00 1667.9
Bhi08g02111 . 32 1056 Histidine Kinase Gene Family AT2G18790 59.6 0.0e+00 1233.0
Bhi04g01236 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1088.6
Bhi04g01235 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1088.6
Bhi05g01474 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 0.0e+00 1085.1
Bhi05g01475 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 0.0e+00 1085.1
Bhi04g01239 . 28 1075 Histidine Kinase Gene Family AT2G18790 51.4 8.2e-312 1067.4
Bhi05g01474 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.0 0.0e+00 1378.2
Bhi05g01475 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.0 0.0e+00 1378.2
Bhi01g01090 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1155.6
Bhi04g01236 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1112.4
Bhi04g01235 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1112.4
Bhi01g01090 . 3 1122 Histidine Kinase Gene Family AT4G16250 75.4 0.0e+00 1711.4
Bhi08g02111 . 33 1117 Histidine Kinase Gene Family AT4G16250 58.2 0.0e+00 1278.5
Bhi04g01236 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1134.0
Bhi04g01235 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1134.0
Bhi05g01474 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Bhi05g01475 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Bhi04g01239 . 27 1136 Histidine Kinase Gene Family AT4G16250 50.4 0.0e+00 1091.3
Bhi08g02111 . 15 1118 Histidine Kinase Gene Family AT4G18130 62.2 0.0e+00 1354.0
Bhi01g01090 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1269.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2002 PF02518 HATPase_c 1.10E-27 CL0025 Bhi TR