Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03051 TCACTTTCTCTTCTCTCTTGCGCGCGCAGTGGCTGGCTCTGATTTTTCTATTGTCATCAGAAACTTTTGATAAATATCGGTAAAGATTCCTCAGATCTACAGTTGAAGCCATTCACTGTTCTTCAGTTTTCGTTTCTTCCAGTGCTATTCAGACTTCGGAGGGAGGTTTTGGTGCTGTTTTGGCTTTTTGATATTGCGAATACGAGGACCTGCTCTGTAACTACGCGCATCTACGACAGTCTCGAGGTTTTTCTCCTATTTATTTGATCGCACCGTCTTGTGGGCGTTGGATGGAACATGGATGCGTTAAGATGCACGCCGTATTACGGCCTCAAGGAATTTATCTGCAGTAGAATTGACTCATGTACTTTCATGTGCAATTTGGAAGTAATTCTTGAGTAATTGCCATGGTCTGCGAGATGGAGACTGGTGTTATTGAAGATATGGACATCGAAGCGGTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGCTGGAAGAAGTTAACATAATAGAGGAACCGACAATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACTGAGAAAGGATCTTCACAATTACAATACCTTGCAAAGCAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATCCTAAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAAATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCTATTTTGGAAGAAGCTTGTGATATATGGCAAGATATTCCAAGGAGGAAAACTGATTTTGTGGTTCAAAGTAAGAGAGTTGAAATTGATGCAGAGTATGATACAGTGACATACTGGAAGCAACGAGCCTTGGATCTGGAAAAGTTATTGGAAGCAAGTCTACAGCGAGAGCAGATGCTTGCCGAGAAGCTTAAGGAAAACATAAAAAATATTGAAAAGCAGTCCTCACCAGTTGAGGAGTTATCACAGATTCTTAAAAGAGCCGACAATTTCTTGCATTTTGTTCTACAGAATGCACCAGTTGTTTTTGGTCATCAGGACAAAGAGTTGCGCTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTCAGTGGTGCTGGTGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTCTGGAGAAAGGGTTACCTGCAAAGAGGGAGATTCAGTTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAATAAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGTGAGGAGATTGCAGTACAAAAAGCCAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATTAGATCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATTCTGTCCACCACGAAACTTGATCGGGAGCAAAAACATCTGTTAGATGTTATGTTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTTTCTAAGGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTGCTACAGACTGCTGCCGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATCCGGCAAATCCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCTTATCCACCCATTGGGACAGGAGAAGAATGCCATAAGAAATCAACTGCTGATAACTCAACAGTTCCGGTACATGGTTTGCAAGAAGGAACATGTCTTCCAGCCTCTCAGAATGGCTTGAGTGGCCAAAAACACGGCGACAGAAATAATTTGCATTGTGATGCACCAGGAACCCCAAGCAAGAGTGAAACCACAATGAATGGAAACAGAGAAAACAAATCTTGTTCAACTGAAACGACGGTATGGATATGCTGTGATGTATATGACACAGGAATTGGTATACCAGAAAATGCGTTACCAACCCTTTTTAAGAGGTACATGCAAGCCAGTGCCGATCATGCTCGAAAGTATGGAGGGACTGGACTTGGGCTGGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTTTCCAGCCGAGAGAACCATGGATCTACTTTTACATTTGTACTGCCATACAAGGTTTCAACCACATGTAGTCCTTCCGAAGATTCTGATGAGCTCTCAGACGAAGAGTCTACAAACGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCTCACAGTTTCAGTTCGCTATCATCTTCTAATGGATCCACTAGGATCCCAAACTCATTGTTGCATACAACTGGGTATCCCACCTCAACCAAACTCAATGGCTTAGCTGAAGGTGGTCCTTATCCTATTACCTCAAACAACATCGATGCGCGTTACGCCAATGCCGCTGCTGTAACCTCAAGCGAATCACAATGCTCGTCAAGTCAGATAAACTCAAATCTTGATAACCAAAACCAACCAGACACAAATGCTCGGTTGCAAAATATCAGTGGCATGAATTCCCTTCCCAGATCAGAAACAACAAAGCAACAAGATAGACCGGAAAAACAAAGTAATAAACTTCAAAAAACAGAGCAGCGGAAAGAAAGATCCGATACAAGTAATCATTGCAGAAATAGTAGTTGTGGTTCTGAAGTAACAATGACATTGGAACCTAGAATTCTTCTTGTTGAGGATAATAAGACCAATATTATGGTGACTCAGTCTATGATGAAGAAGTTCGGCCAAAAAATTGACGTTGTAACCAACGGCATTGAAGCTGTTCGTGCAGTTCAAAGGCGTTCTTATGATCTCATTCTCATGGATGTATTCATGCCAGTTATGGATGGGCTTGAAGCTACAAGGATAATACGATCATTTGAGGAAACAGGAAGCTGGGAGGCAGCTGTAAATGCTGGAATACACCCAACTACACCTTCTTGGATTCCTTCCTCCTCCCCCAACAGGATGCCCATCATTGCTATGACGGCGAATTCAATGTCAGAAAGTGCAGAAGAGTGTTATGAAAATGGGATGGACTCGTTCGTATCAAAGCCAATCACGTTCCAGAAGTTGAAAGAATGTCTTGAACGATATTTGCCACAGCCACAACCACAACCTCCCTTGTAA 3404 41.66 MVCEMETGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEEACDIWQDIPRRKTDFVVQSKRVEIDAEYDTVTYWKQRALDLEKLLEASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQKHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPIGTGEECHKKSTADNSTVPVHGLQEGTCLPASQNGLSGQKHGDRNNLHCDAPGTPSKSETTMNGNRENKSCSTETTVWICCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFVLPYKVSTTCSPSEDSDELSDEESTNDEMTEGFFQFQPHSFSSLSSSNGSTRIPNSLLHTTGYPTSTKLNGLAEGGPYPITSNNIDARYANAAAVTSSESQCSSSQINSNLDNQNQPDTNARLQNISGMNSLPRSETTKQQDRPEKQSNKLQKTEQRKERSDTSNHCRNSSCGSEVTMTLEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPVMDGLEATRIIRSFEETGSWEAAVNAGIHPTTPSWIPSSSPNRMPIIAMTANSMSESAEECYENGMDSFVSKPITFQKLKECLERYLPQPQPQPPL 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 78962302 78972376 - XM_039043432.1 Bhi09g03051 45668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03051 998 Pfam Response regulator receiver domain 850 917 IPR001789 GO:0000160
Bhi09g03051 998 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Bhi09g03051 998 Gene3D - 844 989 - -
Bhi09g03051 998 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155|GO:0007165
Bhi09g03051 998 MobiDBLite consensus disorder prediction 767 803 - -
Bhi09g03051 998 Gene3D PAS domain 205 335 - -
Bhi09g03051 998 MobiDBLite consensus disorder prediction 804 831 - -
Bhi09g03051 998 SUPERFAMILY CheY-like 848 995 IPR011006 -
Bhi09g03051 998 Gene3D - 435 676 IPR036890 -
Bhi09g03051 998 MobiDBLite consensus disorder prediction 569 587 - -
Bhi09g03051 998 Gene3D - 336 434 - -
Bhi09g03051 998 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 990 - -
Bhi09g03051 998 Coils Coil 181 208 - -
Bhi09g03051 998 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310|GO:0016772
Bhi09g03051 998 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310|GO:0016772
Bhi09g03051 998 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310|GO:0016772
Bhi09g03051 998 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Bhi09g03051 998 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 670 IPR003594 -
Bhi09g03051 998 Coils Coil 92 112 - -
Bhi09g03051 998 SMART HKATPase_4 482 672 IPR003594 -
Bhi09g03051 998 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Bhi09g03051 998 Coils Coil 342 362 - -
Bhi09g03051 998 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Bhi09g03051 998 MobiDBLite consensus disorder prediction 549 587 - -
Bhi09g03051 998 MobiDBLite consensus disorder prediction 767 840 - -
Bhi09g03051 998 ProSiteProfiles Response regulatory domain profile. 849 989 IPR001789 GO:0000160
Bhi09g03051 998 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 990 - -
Bhi09g03051 998 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Bhi09g03051 998 CDD REC_hyHK_CKI1_RcsC-like 850 985 - -
Bhi09g03051 998 SMART REC_2 848 985 IPR001789 GO:0000160
Bhi09g03051 998 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03051 - - - csv:101219807 1758.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g03051 Bhi-Chr9:78962302 Bhi07g00162 Bhi-Chr7:8809596 8.41E-60 dispersed
Bhi09g03050 Bhi-Chr9:78962115 Bhi09g03051 Bhi-Chr9:78962302 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g00162 . 20 1005 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1352.0
Bhi12g00966 . 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00965 CCT 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00967 . 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00964 . 1 833 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1140.2
Bhi05g01444 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi05g01443 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi05g01445 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi12g02461 . 58 1003 Histidine Kinase Gene Family AT2G01830 53.6 1.2e-272 937.2
Bhi12g02460 . 58 1003 Histidine Kinase Gene Family AT2G01830 53.6 1.2e-272 937.2
Bhi10g01319 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi10g01320 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi10g01318 . 286 1241 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi09g03051 . 1 989 Histidine Kinase Gene Family AT5G10720 57.6 1.7e-294 1009.6
Bhi09g03050 . 1 989 Histidine Kinase Gene Family AT5G10720 57.6 1.7e-294 1009.6
Bhi04g01236 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.6 0.0e+00 1825.1
Bhi04g01235 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.6 0.0e+00 1825.1
Bhi04g01239 . 3 1141 Histidine Kinase Gene Family AT1G09570 71.8 0.0e+00 1642.1
Bhi05g01474 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.0 0.0e+00 1211.4
Bhi05g01475 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.0 0.0e+00 1211.4
Bhi01g01090 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.5 0.0e+00 1198.0
Bhi01g01090 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.6 0.0e+00 1667.9
Bhi08g02111 . 32 1056 Histidine Kinase Gene Family AT2G18790 59.6 0.0e+00 1233.0
Bhi04g01236 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1088.6
Bhi04g01235 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1088.6
Bhi05g01474 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 0.0e+00 1085.1
Bhi05g01475 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 0.0e+00 1085.1
Bhi04g01239 . 28 1075 Histidine Kinase Gene Family AT2G18790 51.4 8.2e-312 1067.4
Bhi05g01474 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.0 0.0e+00 1378.2
Bhi05g01475 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.0 0.0e+00 1378.2
Bhi01g01090 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1155.6
Bhi04g01236 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1112.4
Bhi04g01235 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1112.4
Bhi01g01090 . 3 1122 Histidine Kinase Gene Family AT4G16250 75.4 0.0e+00 1711.4
Bhi08g02111 . 33 1117 Histidine Kinase Gene Family AT4G16250 58.2 0.0e+00 1278.5
Bhi04g01236 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1134.0
Bhi04g01235 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1134.0
Bhi05g01474 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Bhi05g01475 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Bhi04g01239 . 27 1136 Histidine Kinase Gene Family AT4G16250 50.4 0.0e+00 1091.3
Bhi08g02111 . 15 1118 Histidine Kinase Gene Family AT4G18130 62.2 0.0e+00 1354.0
Bhi01g01090 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1269.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2003 PF02518 HATPase_c 1.10E-27 CL0025 Bhi TR