Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03063 GGAAGAGAAGACAACAGCAACATTGGCTCAAAATCCAAATTTCCCTCCTCTTCCTTTGCGCCATTATTTCAAAACTCTCCATTCCAAAACCCTCTCTTCTTCCACCTTCCTTCCCCCTCAATTCAATTCCCTCTTCACTGATTGTTCCTCAGCCCTCATGCCCCTCCTCAACGCCGCCGCCCACCGCCGCCACCAGTCATCTGCATCCCAATCACCTCAATTCCACATACCTACTAATGCGGCCGATGACGACGACGATTTTCTTCCTTCTACCCAGACAGTCCTCTCCTCGCGATCTTCAATCTCGCAAAAACCCCTCGCAACCTCCGACTTATCCCTCCACATTCGCGCTCCCAAGAGGCCGAAGCCTTCTGCTCCGACCGCCACTGGCAAGGAAAACGTTCCCTCTATAACACATCGCGATGTTGGGTTTCAGCCGAATTTTGGTAGACATAATGGCGCTGTTGTTTTGGATGATGGTGAGGTGTTCAGAGCATCGGATACTGTTTTGGGTTGCAGTTTGGATTTGATACAACCGAGCATTGTTGGCTGCAGTTACGAAACTCATGATGTAAACTCGGGAGAGGAGATAGTTGATGGGGATGATGGTTTTTCTGGTGCGATGGATGAATGTAAGGGGTCGAAGGGAAAGGGGGGCTACCTGGTCAATTCAATTGAATCTAGGTTAGTGAATTCGAGAGTAGATTGCGATGTTGGGGTCAGTGGAAGTGGAGTTGACAAAGTGAGCAATGATGGTTTTGAGTCGGATACAGAGCTAGACTTGTTGCTCAATCTGCATTCGGAACTGGATGAGGAAGGCGGTATTAGTGGAGTGGGATTTGGTACCGAGGCAACAGATTTTCTGATGGATGAAGAAGGTCTGATTCAATGTCCTCTTTGTGGGGTTGATATTTCTGATCTTAGTGACGAGCAACGTCTTGTTCACACCAATGAATGTATTGACAAAGAGGACGCCCAAGCTCAAAATGCTGCTCTCACCCCTGATAAAAAGCAAACTTTAGGCCCTCAACAGTCAGGTGATAATTCCAGATTTTCAAATGTTCTAAGATGGTTGCATGATCTTGGTTTATCGAGATATCAAGACATTTTTGTTAGGGAGGAGATCGATTGGGATGCGTTACAGTGGTTGACAGATGAGGATCTCAATAATATGGGTATCACTGCACTTGGCCCCCGAAGGAAGATCACACATGCTCTCTCCGAACTCAGAAAAGAATCTGCTGCCGTTGAAACTTGCACGAATTCACATGCTCCTTCTGGTACTGGGCAACAGAGTAACAATGGTTCAGATGGGCGTGAAGGATCAATCAAGGGAACTAATAGAACACCTGCGAATAAGCTGATCACTGATTATTTCCCTGGCTTTGCCACTAATAAGAAAAATGCATGCAACATCTCTAGTGGTCAGAAAGATGTGGGGAAAAAAATACCCGACTCTCTTAACAAAGGTAAAACTGCAAAAAGAAATGTAAGAAATGGGAAGCTTGGAAATGTTCCCGTCTGGAGTTGTATACCAGGGACACCATTTAGGGTGGATGCTTTTCGACATCTTAGAGGAGATTGTTTCCATTGGTTTCTTACTCACTTTCATATGGATCATTATCAAGGTCTGACAAAGTCATTTTGTCATGGAATGATTTATTGTTCGCCTATAACAGCAAAATTAGTAAACATGAAGATTGGAATTCCATGGGAAAGGTTACAAGTTTTACCTCTCGACCAAAAAATTAACATTGCGGGAATAGATGTAACCTGTTTTGATGCTAATCATTGCCCTGGTTCAATAATCATACTCTTTGAACCACCCAATGGTAAGGCTGTTCTACATACGGGGGACTTTCGATTTTGTGAGCAAATGGGATGCTTGTCGGTTTTTCAAACATGTCGTATCCATACCTTGATCCTTGATACCACTTATTGTGATCCCCAGTATGATTTCCCAAAGCAGGAGACCGTTATACAATTTGTAATTGATGCCATTCAAGCCGAAGCTTTCAACCCTAAAACTCTTTTCCTGATTGGATGTTATACCATCGGAAAGGAACGACTTTTTTTGGAAGTTGCTCGTGTCTTGCGCAAGAAGGTGTATGTAACTGCAGCAAAGTTAAGGATTTTGAAATGCTTGGGGTTCTCAGCAGAGGACATGCAGTGGTTTACAGTGAATGAACGGGAAAGCCACATACATGTTGTACCTCTGTGGACACTTGCAAGCTTCAAACGACTGAAGCATGTGTCAAATCAATATGCAAATCGATTCAATCTTATAGTTGCTTTCTCTCCTACCGGCTGGGCACTTTCAAAAGGAAAGAAAAAATCTCCTGGGAGAAGGTGGCAGCAAGGTACAATTATAAGATATGAGGTGCCATATAGTGAGCATAGCAGCTTCACAGAACTGAAGGATTTTGTAAAGCTTGTATCTCCTGTGAACATAATACCAAGTGTGAATAATCATGGACCTGACTCGGCCCGTGCCATGATCTCGCTTTTGTCATCTTAATTTGTTGACCACACTCCTAATAATGGTTGGGCCTCTCACATTTTCAACTGCACTACATATATTGAAATCAAATCTGCAGATTCACGTTTGTATTGCCAACCAAGCCAAAACCATACGCATATTGTTGGCTCCTAATGGTCATAATTGTGGCTGAAAGGCACCCGAAGGTCAATCGTATCTTGATTTGAGGTATGCTTAGATTGACTCTTATATTTATAATTATATATATACTAGCTTAGGATCCTAGGAACTTGGTTGGCCTTATTAGATGATTTACTCTCAATATTCTGTGTCAATTTAGATATTCAATTGAATAGCTTATGTAACTTTTGATTTAGTAATATGCAAATTATAAATGCTATATGCACAATGTTGTATTCATATTCATTAGTCTGCCTAGCTATATTTGCACACTTGCATATTCCGTTTTCAT 2951 42.46 MPLLNAAAHRRHQSSASQSPQFHIPTNAADDDDDFLPSTQTVLSSRSSISQKPLATSDLSLHIRAPKRPKPSAPTATGKENVPSITHRDVGFQPNFGRHNGAVVLDDGEVFRASDTVLGCSLDLIQPSIVGCSYETHDVNSGEEIVDGDDGFSGAMDECKGSKGKGGYLVNSIESRLVNSRVDCDVGVSGSGVDKVSNDGFESDTELDLLLNLHSELDEEGGISGVGFGTEATDFLMDEEGLIQCPLCGVDISDLSDEQRLVHTNECIDKEDAQAQNAALTPDKKQTLGPQQSGDNSRFSNVLRWLHDLGLSRYQDIFVREEIDWDALQWLTDEDLNNMGITALGPRRKITHALSELRKESAAVETCTNSHAPSGTGQQSNNGSDGREGSIKGTNRTPANKLITDYFPGFATNKKNACNISSGQKDVGKKIPDSLNKGKTAKRNVRNGKLGNVPVWSCIPGTPFRVDAFRHLRGDCFHWFLTHFHMDHYQGLTKSFCHGMIYCSPITAKLVNMKIGIPWERLQVLPLDQKINIAGIDVTCFDANHCPGSIIILFEPPNGKAVLHTGDFRFCEQMGCLSVFQTCRIHTLILDTTYCDPQYDFPKQETVIQFVIDAIQAEAFNPKTLFLIGCYTIGKERLFLEVARVLRKKVYVTAAKLRILKCLGFSAEDMQWFTVNERESHIHVVPLWTLASFKRLKHVSNQYANRFNLIVAFSPTGWALSKGKKKSPGRRWQQGTIIRYEVPYSEHSSFTELKDFVKLVSPVNIIPSVNNHGPDSARAMISLLSS 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 79187449 79194820 - XM_039041201.1 Bhi09g03063 45680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03063 786 MobiDBLite consensus disorder prediction 10 25 - -
Bhi09g03063 786 MobiDBLite consensus disorder prediction 33 57 - -
Bhi09g03063 786 CDD SAM_superfamily 302 356 - -
Bhi09g03063 786 Pfam DNA repair metallo-beta-lactamase 669 772 IPR011084 -
Bhi09g03063 786 Gene3D - 600 747 - -
Bhi09g03063 786 SUPERFAMILY SAM/Pointed domain 297 359 IPR013761 -
Bhi09g03063 786 MobiDBLite consensus disorder prediction 362 400 - -
Bhi09g03063 786 Gene3D - 459 769 IPR036866 -
Bhi09g03063 786 Pfam SAM domain (Sterile alpha motif) 296 358 IPR001660 GO:0005515
Bhi09g03063 786 CDD SNM1A-1C-like_MBL-fold 441 597 - -
Bhi09g03063 786 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 243 783 - -
Bhi09g03063 786 MobiDBLite consensus disorder prediction 1 85 - -
Bhi09g03063 786 SMART SAM_4 294 360 IPR001660 GO:0005515
Bhi09g03063 786 SUPERFAMILY Metallo-hydrolase/oxidoreductase 474 769 IPR036866 -
Bhi09g03063 786 MobiDBLite consensus disorder prediction 361 400 - -
Bhi09g03063 786 Gene3D - 293 370 IPR013761 -
Bhi09g03063 786 ProSiteProfiles SAM domain profile. 297 360 IPR001660 GO:0005515
Bhi09g03063 786 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 243 783 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03063 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - csv:101218609 1368.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00635 Bhi-Chr2:12326735 Bhi09g03063 Bhi-Chr9:79187449 4.15E-08 dispersed
Bhi03g01771 Bhi-Chr3:37156581 Bhi09g03063 Bhi-Chr9:79187449 1.07E-07 dispersed
Bhi05g01809 Bhi-Chr5:57286314 Bhi09g03063 Bhi-Chr9:79187449 1.14E-33 dispersed
Bhi09g03063 Bhi-Chr9:79187449 Bhi10g01710 Bhi-Chr10:43016517 9.16E-14 dispersed
Bhi09g03063 Bhi-Chr9:79187449 Bhi09g03064 Bhi-Chr9:79187992 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34