Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03065 GGTGCTGCTGGTATTAGCCAAAGAGGGTTTCTCCTACAGAGAGAAGAGAGGAGAGAGAGAGAGAGAGAGAGAGGCGAAAGCCGGAGAGAGATAGAGAAGTTGAAGAGAAGACGAATTTCTGAAAGCTCATAGAACACTGAAGAGAGAGAGAGAGAGAGTTACAAAGTTCTGAATTGAAGATAAAAGTTATCCCTTATCTTTAATTCTTTAGCCTTCTGACTTCATCCGATCCGTTTCCATGGATCCTTTCGATTTGTTTCGTAAAGGTTTTGGTTGACGCTACAAAAGCTCGTGCTTTTTCCCACCGGTTTTTTTTTTTTTTTTGTTCCCCCAAATACATGTGAGCATTCTATTTGTATTAGCTAATAATGAATGTGTCCAAGAAAGGAACGCAAACCAGTGAGGTAAAACTAAATATTGGAAGCAAGGTGACTGCTTTGAATCCAAATGCTGCTGAGTTTATTCCCTTTGCCCTTAGAGCATCTCCAATTGGAAGTAGTAGTGCGCCAGATTTGACAGAAAGATTTTCTACTTCTGGGACATTAGGAAAGGCTGTTCTAGATCGGTCTGAGTCATCTGTATCAAATAATTCTGATGACGAGGCCCGTCAATTCTGGAGACATCAGCTCCCTGATGATATCACACCTGATTTCAAGTCAATGGGAGAAGATGAGAGCCTATCTCTTGGAAATATTTCGTTTGCTGGCTTATCCTTGCATGATGACAGTGAAGCCTCTTTATTCGCTGCCACTACTGGCAATGAATATTTATTGAACGATCAGCGGGATCCAAATATAAGTCACTTTAATGGCAGTCAATTTGCCGACAAGTTCAGATTCTCAACTGCTTATGGAGAAGATCCATCTTCAGCCAGTCTTTTCCAAATTCCAAATAAACCTTGGCAGAAGCCTGTTTTTAACAATAATCTAACGGCTGGCAACGAGCGGCACCTTCTCTATCATGGAAATTCTGGGAGGGGATTAGCCATGGATGTCTTGAGTGAGCAAACAACTATGGATGAGAGTGATACTCTAAACCCTGTTGAGTTTTTGGCTTTACAGTTCCCTGGTTTTGCTGCTGAAAGCCTCGCAGAAGTTTACTTTGCCAATGGAGGTGACTTAAACCTGACTGTTGAGATGCTCACGCAATTAGAGCTTCAAGTTGATGGTGGAATAAGTCAAAATCTGAATTCCAAGACAATGTCTGCCCCCAATCTTAGTGCAATGGACTTTCCTGCACTCACAGTGTCAGGTGGTCAAAATGGTCATCCAAAATTTGATGGGGCTGATCTTCAACAAAGTGCCAATCCTTTTGTTTCTTCTGATAAGGATGGCATGCTTTTCTTCAAGTCAAGCAGTGGTCCATCTAGAGGTGCTACTGATTTTGCTTCCACTGTCAAGAAATTGGCATCTCAGGATTCTGGTATGTGGAAGTACAACGGAAATGGTTCTGCTGATGACTCTATTGGCTCGAGTAGAAGTTCTCATATGTTAGGTAGCAAGTACACTACTGGTGGTCAGGGGAAAGACACCTATGGTGAGAGGTTGCTGCACCGTGGTTCAGCTCGGGCTGCTCCAGTTTGGCTTGAAACAGGCGAAGCAGTTGCAAACATGTATTCTGAGCAGCGGGAGGAAGCACGTGATCATGCACGGCTGCGAAATGCATATTTTGAACAGGCACGACAAGCGTACCTCATTGGTAATAAGGCTCTAGCAAAGGAACTAAGTGTAAAGGGACAGTTACATAATATGCACATGAAGGCAGCTCATGGAAGAGCCCAAGAATCTATTTATCGGCAGAGGAATCAATTAGGCGCAGACAATCAAGGAAATGGAAGGGGACATGAACGTATGATCGACCTGCACGGACTGCATGTCAGCGAAGCAATTCACGTCTTGAAGCATGAGCTGAGTGTGCTGAAGGGTACTGCCAGAGCCTCCGGACAACGTCTGCAGGTTTATATTTGTGTTGGAACAGGACACCACACACGGGGCTCCCGTACTCCTGCTAGACTTCCGGTGGCTGTACAGAGATATTTGATCGAAGAGGAAGGCCTCGACTTTAGCGAGCCACAACCAGGACTGCTTAGAGTTGTGATTTATAAAATGCTTTTGCGAGCCAATCTCAAAGTGCCCTCCATCTCCTCTCGTACGAGTTTCGCTTGCCCGTTTCTACTTACTTGCCGATTCTCCTCTCTCTCATCTTCGCCGTCGTCTTCTTCCTCTTCTCAATGGTTCTCTCTTCTTCGCTCCGCCGTTGCCATGGCCGATTTGAAGCTTGCGAAACGAGTTCATGCATGTATCGTGACCTCAGGCGACCTCCCAGATCGGTTTCTAACCAACAATCTCATCACTATGTATTTCAAATGTGGGTCTCTCTGTTCTGCCCGCCAGGTGTTTGATAAAAGTTCTGATCGTGATCTCGTAACATGGAACTCCATTTTGGCTGCCTATGCCCACTCTGCTGATTCCAGTTTTGAGAATGTTCTTGAGGGCTTTCGCCTCTTTGGGCTTCTACGCGAGTCTGGTTTTTCTATGTCTCGACTTACTTTGGCGCCATTGTTGAAGCTGAGTTTGCTGTCTGGCTTTGGGCAGGTATCTGTGGCTATCCATGGATATGCTGTTAAGATTGGCTTGGAATTGGATCTCTTTGTTTCAGGGGCTCTTGTGAATATCTACTGCAAATATGGCCTAGTTGGTCATGCTCGTTTACTGTTCGATGAAATGCCTGAAAGGGATGCTGTGTTGTGGAATGTAATGCTCAAGGCTTATGTTGATAATGGCTTTGAGGATGAAGCTCTTCAGTTCTTCTCTGCGCTTCATCGAAGTGGGCTTTTTCCTGATTTCTCAAGCTTGCATTGTGTTATCAATAGTGTTAAGAATGGAGTTTCTGATAACAGAAAGAGGTACAAGGAGCAGGTTAAGGCCTACACGATGAAGATGTTTCCCTTCGACGAAGGTTCAAATATATTTTCTTGGAACAAGAAGTTATCAGAGTATCTTCAAGCTGGCCAAATTTTTGCAGCCATTGATTGTTTTAAGAATCTGTTAAGATCAACAGTAGGATATGATCGTGTAACATTAGTCATCATTTTATCTGCAGCTGTTGGGGCGAATGTTCTTGATTTGGGGGAACAAATACACGTACTTGTTATAAAATCAGGTTTTGATTCAGTAGTTTCTGTTTCAAATAGTCTCATGAACATGTACTCGAAGGCGGGAGTTGTTTATGCTGCAGAAAAGACGTTCATTAACTCGCCAAAATTGGATCTAATTTCGTGGAACACGATGATATCCAGTTATGCGCAGAATAATCTTGAAACGGAGGCAATTTGCACATTCGTAGATCTATTACGCTATGGGCCGAGACCGGATCAATTTACCTTGGCTAGTGTTTTAAGAGCTTGCTCCTCAGGTGATGAAGGAGAGTATTTCACTCTCAGCTCACAGGTTCACAACTATGCCATAAAATGTGGTATTGTTAATGACAGTTTTGTATCTACAGCACTCATCGACGTGTACTCAAAGAGTGGAAAAGTCAATGAGGCTGAGTTTCTGTTGCATTGCAAGTACGATTTTGATTTGGCTTCTTGGAACGCATTGATGTTTGGGTACATAAAGAGTAACAAAAGTAGAAAGGCATTGGAACTTTTTAGTCTGATGCATGAAATGGGGGTGGCGATTGACGAAATCACACTGGCGACTGCAATTAAAGCTTCTGGTTGCTCAATCAATTTGAAGCAAGGGAAACAAGTTCAAGCTTATGCAATTAAGCTTGGATTCAACAATGATTTATGGGTCAGTAGTGGTGTTCTGGATATGTACATTAAATGTGGAGACATGCCAAATGCTCTTGAATTGTTTGGTGAAATTAGTAGACCCGATGATGTTGCCTGGACGACTATGATCTCAGGATATGTCGAAAATGGAGACGAGGATCTTGCTCTTTCTGTGTACCATTCAATGAGGGTCTCTGGAGTTCAACCTGATGAATATACCTTTGCTACCCTCATCAAAGCTAGTTCTTGTCTAACTGCTCTTGAACAAGGGAGACAGATTCATGCTAATGTCGTTAAGTTGGATTATTCTTTGGACCATTTTGTCGGTACTTCCCTAGTCGACATGTATTGCAAATGTGGAAGTGTTGGAGATGCCTATCGTGTATTCAGGAAGATGGATGTGAGGAAAGTTGCCTTCTGGAATGCCATGTTGTTAGGTTTAGGCCAACATGGCCATGCTGATGAAGCCCTGAATCTTTTCAAAACCATGCAATCAAATGGTATTCAGCCTGACAAAGTTACTTTTATTGGAGTTCTTTCTGCTTGTAGCCATTCTGGCTTGTTTTCTGAAGCCTACAAATATTTTGATGCAATGCTCAAAACATATGGGATTGTACCGGAAATCGAGCATTACTCATGTCTGGTGGATGCGCTTGGCCGGGCAGGATGCATTCAGGAAGCCGAAAACGTAATAGCATCGATGCCATTTGAAGCTTCCACCTCTATGTATAGGGCATTGCTTGGTGCTTGCAGGACTAAAGGAGACACAAAAACAGCAAAACGTGTTGCTGACAAACTCCTGACGTTGGATCCTTCCGACTCGTCTGCTTATGTCCTCTTATCCAACATATATGCTGCTTCCAGACAATGGGATGATGTTACTGATGCTAGAAACACGATGAAGCTGAAAAATGTTAAGAAGGACCCAGGTTTTAGCTGGATCAACGTGAAAAACAAAATACATTTGTTTGTGGTGGACGATCGATCACATCCGCAAGCTAGTCTGATATATGAGAAAGTTGAGGATCTTATGAAAAGAATGAGAGAAGAAGGATCTTATGTCCCGGACACAGACTTTATGTTGCTTGATGTTGAAGAAGAGGAAAAAGAGGGCGCTCTCTACTATCATAGTGAGAAACTTGCAATAGCTTTCGGGCTAATTAGCACGCCTCCCTGGGCAACCATTCGTGTGATAAAGAATCTTAGGGTTTGTGGTGATTGCCATAGTGCCATAAAGTGCATATCGAAGCTCACTCAGAGGGAGATTGTTCTAAGGGATGCAAACAGATTCCATCACTTCAGGAATGGAACTTGTTCCTGTGGTGATTACTGGTAGTATCATTTGCCAAGATCCAATTCTCTGTGTTTGTTCTTTCGAGATTATCTCGATCCTCGATCGCTGGTCGTTCGGCACGAGCATCTCCCACCTATTTTTTTCAACATATGAAGTGTGCTTGGAAGGTTAGACTGAAGATTTTGATGAGCTTCCAGCAGACGATGAGTAGATTCACCGTTGAAATTTAAGGATTGACATTTGTTTACCAATGGCCTCTTCGTTCAAATTGATTTTTAAGATGGTCTGTGAGTTGCAGGCTTCAATCAGAA 5383 43.1 MNVSKKGTQTSEVKLNIGSKVTALNPNAAEFIPFALRASPIGSSSAPDLTERFSTSGTLGKAVLDRSESSVSNNSDDEARQFWRHQLPDDITPDFKSMGEDESLSLGNISFAGLSLHDDSEASLFAATTGNEYLLNDQRDPNISHFNGSQFADKFRFSTAYGEDPSSASLFQIPNKPWQKPVFNNNLTAGNERHLLYHGNSGRGLAMDVLSEQTTMDESDTLNPVEFLALQFPGFAAESLAEVYFANGGDLNLTVEMLTQLELQVDGGISQNLNSKTMSAPNLSAMDFPALTVSGGQNGHPKFDGADLQQSANPFVSSDKDGMLFFKSSSGPSRGATDFASTVKKLASQDSGMWKYNGNGSADDSIGSSRSSHMLGSKYTTGGQGKDTYGERLLHRGSARAAPVWLETGEAVANMYSEQREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMHMKAAHGRAQESIYRQRNQLGADNQGNGRGHERMIDLHGLHVSEAIHVLKHELSVLKGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLRVVIYKMLLRANLKVPSISSRTSFACPFLLTCRFSSLSSSPSSSSSSQWFSLLRSAVAMADLKLAKRVHACIVTSGDLPDRFLTNNLITMYFKCGSLCSARQVFDKSSDRDLVTWNSILAAYAHSADSSFENVLEGFRLFGLLRESGFSMSRLTLAPLLKLSLLSGFGQVSVAIHGYAVKIGLELDLFVSGALVNIYCKYGLVGHARLLFDEMPERDAVLWNVMLKAYVDNGFEDEALQFFSALHRSGLFPDFSSLHCVINSVKNGVSDNRKRYKEQVKAYTMKMFPFDEGSNIFSWNKKLSEYLQAGQIFAAIDCFKNLLRSTVGYDRVTLVIILSAAVGANVLDLGEQIHVLVIKSGFDSVVSVSNSLMNMYSKAGVVYAAEKTFINSPKLDLISWNTMISSYAQNNLETEAICTFVDLLRYGPRPDQFTLASVLRACSSGDEGEYFTLSSQVHNYAIKCGIVNDSFVSTALIDVYSKSGKVNEAEFLLHCKYDFDLASWNALMFGYIKSNKSRKALELFSLMHEMGVAIDEITLATAIKASGCSINLKQGKQVQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDDVAWTTMISGYVENGDEDLALSVYHSMRVSGVQPDEYTFATLIKASSCLTALEQGRQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVGDAYRVFRKMDVRKVAFWNAMLLGLGQHGHADEALNLFKTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMLKTYGIVPEIEHYSCLVDALGRAGCIQEAENVIASMPFEASTSMYRALLGACRTKGDTKTAKRVADKLLTLDPSDSSAYVLLSNIYAASRQWDDVTDARNTMKLKNVKKDPGFSWINVKNKIHLFVVDDRSHPQASLIYEKVEDLMKRMREEGSYVPDTDFMLLDVEEEEKEGALYYHSEKLAIAFGLISTPPWATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 79222406 79235930 - XM_039040732.1 Bhi09g03065 45682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03065 1581 Pfam Domain of unknown function (DUF1771) 416 479 IPR013899 -
Bhi09g03065 1581 Pfam PPR repeat family 1274 1320 IPR002885 -
Bhi09g03065 1581 Pfam PPR repeat family 1171 1217 IPR002885 -
Bhi09g03065 1581 TIGRFAM PPR: pentatricopeptide repeat domain 1074 1106 IPR002885 -
Bhi09g03065 1581 TIGRFAM PPR: pentatricopeptide repeat domain 1174 1208 IPR002885 -
Bhi09g03065 1581 TIGRFAM PPR: pentatricopeptide repeat domain 1277 1308 IPR002885 -
Bhi09g03065 1581 TIGRFAM PPR: pentatricopeptide repeat domain 969 1002 IPR002885 -
Bhi09g03065 1581 TIGRFAM PPR: pentatricopeptide repeat domain 1310 1343 IPR002885 -
Bhi09g03065 1581 TIGRFAM PPR: pentatricopeptide repeat domain 1247 1273 IPR002885 -
Bhi09g03065 1581 TIGRFAM PPR: pentatricopeptide repeat domain 792 825 IPR002885 -
Bhi09g03065 1581 Pfam DYW family of nucleic acid deaminases 1490 1581 IPR032867 GO:0008270
Bhi09g03065 1581 Pfam E motif 1394 1452 IPR046848 -
Bhi09g03065 1581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 790 824 IPR002885 -
Bhi09g03065 1581 SUPERFAMILY SMR domain-like 494 576 IPR036063 -
Bhi09g03065 1581 Gene3D Tetratricopeptide repeat domain 868 1022 IPR011990 GO:0005515
Bhi09g03065 1581 Gene3D Tetratricopeptide repeat domain 1274 1466 IPR011990 GO:0005515
Bhi09g03065 1581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 967 1001 IPR002885 -
Bhi09g03065 1581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1273 1307 IPR002885 -
Bhi09g03065 1581 SMART DUF1771_2 415 480 IPR013899 -
Bhi09g03065 1581 PANTHER - 624 814 - -
Bhi09g03065 1581 PANTHER - 816 1574 - -
Bhi09g03065 1581 Pfam PPR repeat 969 998 IPR002885 -
Bhi09g03065 1581 Pfam PPR repeat 1074 1103 IPR002885 -
Bhi09g03065 1581 Pfam PPR repeat 1247 1272 IPR002885 -
Bhi09g03065 1581 Pfam PPR repeat 792 822 IPR002885 -
Bhi09g03065 1581 Pfam PPR repeat 1347 1371 IPR002885 -
Bhi09g03065 1581 Pfam PPR repeat 765 789 IPR002885 -
Bhi09g03065 1581 Pfam PPR repeat 1045 1064 IPR002885 -
Bhi09g03065 1581 SUPERFAMILY TPR-like 877 1432 IPR011990 GO:0005515
Bhi09g03065 1581 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 624 814 - -
Bhi09g03065 1581 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 816 1574 - -
Bhi09g03065 1581 SMART SMR_2 493 578 IPR002625 -
Bhi09g03065 1581 CDD CUE_CID7_like 222 264 IPR041806 -
Bhi09g03065 1581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1308 1343 IPR002885 -
Bhi09g03065 1581 MobiDBLite consensus disorder prediction 362 383 - -
Bhi09g03065 1581 Gene3D - 463 578 IPR036063 -
Bhi09g03065 1581 Gene3D Tetratricopeptide repeat domain 746 863 IPR011990 GO:0005515
Bhi09g03065 1581 Gene3D Tetratricopeptide repeat domain 607 742 IPR011990 GO:0005515
Bhi09g03065 1581 Gene3D Tetratricopeptide repeat domain 1023 1126 IPR011990 GO:0005515
Bhi09g03065 1581 Gene3D Tetratricopeptide repeat domain 1127 1229 IPR011990 GO:0005515
Bhi09g03065 1581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1071 1105 IPR002885 -
Bhi09g03065 1581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1172 1206 IPR002885 -
Bhi09g03065 1581 Pfam E+ motif 1457 1484 IPR046849 -
Bhi09g03065 1581 ProSiteProfiles Smr domain profile. 496 578 IPR002625 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03065 - - - cmo:103493901 2849.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02289 Bhi-Chr9:63737872 Bhi09g03065 Bhi-Chr9:79222406 4.85E-08 dispersed
Bhi09g03065 Bhi-Chr9:79222406 Bhi01g01352 Bhi-Chr1:27122740 1.93E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g176 . . . . Bpe02g01566 . . . . . Cma01g01694 . . . . . Cpe06g00267 . . . . . . . Cla05g01639 Cam05g1749 Cec05g1758 Cco05g1814 Clacu05g1740 Cmu05g1625 Cre05g1752 Cone4ag1707 Cone7ag1624 Cone17ag0953 Cone20ag0297 Lsi04g01375 . . . Blo17g00269 Blo18g00255 Bda01g01353 Bda13g01583 Bpe14g00285 . Bma01g00905 Bma02g00334 . . Cmo09g00377 Cma09g00375 . Car01g01308 . . Cpe02g00299 Bhi09g03065 . . . Hepe01g1926 Mch11g0464 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012447 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 0 0 0 1 0 0 0 1 21