Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03087 ATTCCGCTATTTTTTCTTTTTCCCACTTTCCCTCTCTTTGTTATAGTTGAAACGAAGTGGGTTTCTGTTCTTGCACATTTTTTCTGCTTGTTGGTGTGACTTTGCATTCAAGAAACTCTCTCTGTTTCTATTTTCTGTTTAAATTTACCTCTAACAATGTGGGTTTATGTGGGTTTTCTTTATTAAGCTCGATGAACTTGATTGTGTCTTGGTTTGCTCTCAATGACCCTTTTCTTTGATTTCATCTGTTCGGAACTAGCCTTCGACTGTGATGGATGTGAACAGCAATAGAGCTTTGAAAGTTGTTGGAGGAAGTTTGTCTCAGATGGAAAGTGAAAATGGAGGGCAAGTTGCGGTTAATATTAGCAGCGTTGAAAATGGCTATTCTGTACCGAAGCAAAACAGAGTCGATTCACAGACCAAAGAGCCGATTGATTCGAGCATTGGCTATAGCTACGATTCACAACTCGCTCCCACTGCGAATAAGCCACCGAAAATCCCCAGTTCAAAAGGAACCCTCACGCCCAGAAGATCTCTTAGAAGACCAATCCTCTCGAAATCCAAGTCCAGATTTGGGGAACAGCCAGGTTATATCGATTCAGACGTGTTTGAGGAGAATCATGTGTCGTTGAGAGAACAAATCGGTTCAACTTCATCCAGAAGCTCTACTGTCAATACGCCGAAGGCCCAACCTGAGGAAGAAGATGATGCTGGTATCTTCGAGATTGAGCAGTTGAATAATAAGCACAAGAAAGTGAAGGTGAAGACAGTGATTGAGTGGATTGGAGTTTTTTGCATTATTGGTTGCTTGGTGGCTAGTTTGACTGTTAACCCTTGGAAGAATCGCTTCCTTTGGGGTTTAAGGGTTTGGAAATGGCTTTTACTTGCTACTGTGATTTTGTGTGGAGTGATATTTACTCGTTGGGTTATGAATGTGATTGTATTTTTGATTGAGAGGAACTTTTTGCTTAAGAAAAAAGTGCTTTATTTTGTTCATGGGTTGAAGAAGAGTGTTCAAGTGACCCTTTGGTTGACATTGGTTCTCGTTACATGGGGATCATTATTCGATCAGAGAAACCATAAAATTTCGAGTAGGATCACTGCAAAGATTTTGGATTCTGTTACATGGACTCTTGTAAGCCTTCTTATAGGGGCGGTCCTGTTGTTGGTTAAAACATTGTTGCTGAAAATACTTGCCTCCAAGTTCCATATGAATCGATTTTTCGACAGAGTTCAGGAATCCATTTTCCTTCATTATGTTCTACAAACCCTCTCAAGGGGTGTATTTATAGGGGAGGCTGGAACTACTTCCAAATCCAGCAGTGGTAGATTGAGTTTGAAGAGTAAAAAATCAGACCGTAAAGAGGTGATTGACCTGGGAAAGATTCACCAGCTGAAGCGGGAGAAGGTTTCAGCTTGGACAATGAAGGTATTGGTTGATGCAGTTACTAGTTCGGAGATGTCAGTCTCACAAATACTCGATGAAAGCTACCAAGATGTCGCTGATGGTGAGATTGCAGACGAGATGGAAGTTGCCAAAGCTGCCGCCTACAAGATCTTCAACAATGTTGCTCTTCCTGGAAACAAGTTCATAGAGGAAGAGGATCTTCTAAAATTCATGATCAAAGAAGAAGTTGATCTTGTGTTACCACACTTTGAGATAGATGATACAAGGAGGATTGACAAGAAAGCTTTAACAAATTGGGTGGTGAAGGTTTATCAAGGGAGGAAAACTCTAGCACATGCCTTGAAAGACACTAAAACAGCAGTGAAGCAATTGAATAATTTAGTAACGGCGCTTATTATAATCGTAACAGCTGTTATTTGGCTTCTGTTGATGGAAATTGCTACTACCAAAGTACTTGTCTTCCTTCTAACTCAGCTTGCAGTGGCAGCTTTCATGTTTGGAAACACTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGTGTTGTTGATGGCGTCCAGTTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAACCCATCACTAACTACTACAGAAGTCCAGACATGGGTGAAACCATCGAATTCTCAATCGGTTTCACAACACCATTGGAGAGGATTGGGGTCATGAAGGACAAAATAAAGAGGTATTTGGAGAAGAATTCACAACACTGGTATCCAAATCATAGTGTGGTGGTGCAGGAGATCGAAAACGTGAATAAGATCAAGATCGCTCTTTATACGAACCACACCATGAATTTTCAAGACTGGACTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGGATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTCATCCAAGTTGAGGGGCATCACTGAAGTCTACAGGAGATGGTTAGCTTTTGTTAGCTGCTTTGTTAACTTAATTAGAGACATTATGTAATATTAACTAAAAAGAATCCTATATTAGTATCAGTTTAGGCAAGCTACTTCTGGTTATTAATGGGGAAACACTGTCCATTAGAATTGGAAGATATAAGTTGTAGAACTGTTGTAGTAGGTTTAGCTACTGATCTTATTTAGCCATGTAATAATATTTAGAATTGGTGATTAA 2690 40.07 MDVNSNRALKVVGGSLSQMESENGGQVAVNISSVENGYSVPKQNRVDSQTKEPIDSSIGYSYDSQLAPTANKPPKIPSSKGTLTPRRSLRRPILSKSKSRFGEQPGYIDSDVFEENHVSLREQIGSTSSRSSTVNTPKAQPEEEDDAGIFEIEQLNNKHKKVKVKTVIEWIGVFCIIGCLVASLTVNPWKNRFLWGLRVWKWLLLATVILCGVIFTRWVMNVIVFLIERNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWGSLFDQRNHKISSRITAKILDSVTWTLVSLLIGAVLLLVKTLLLKILASKFHMNRFFDRVQESIFLHYVLQTLSRGVFIGEAGTTSKSSSGRLSLKSKKSDRKEVIDLGKIHQLKREKVSAWTMKVLVDAVTSSEMSVSQILDESYQDVADGEIADEMEVAKAAAYKIFNNVALPGNKFIEEEDLLKFMIKEEVDLVLPHFEIDDTRRIDKKALTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLVTALIIIVTAVIWLLLMEIATTKVLVFLLTQLAVAAFMFGNTCKTAFEALIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMGETIEFSIGFTTPLERIGVMKDKIKRYLEKNSQHWYPNHSVVVQEIENVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKRIFEELKINYNLLPQTVHLIQVEGHH 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 79659869 79663362 - XM_039043799.1 Bhi09g03087 45704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03087 727 MobiDBLite consensus disorder prediction 38 85 - -
Bhi09g03087 727 SUPERFAMILY Sm-like ribonucleoproteins 553 613 IPR010920 -
Bhi09g03087 727 PIRSF Memb_At2g17000 15 724 IPR016688 -
Bhi09g03087 727 Pfam Mechanosensitive ion channel 505 710 IPR006685 GO:0016020|GO:0055085
Bhi09g03087 727 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 93 721 IPR016688 -
Bhi09g03087 727 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 93 721 - -
Bhi09g03087 727 Gene3D - 564 613 IPR023408 -
Bhi09g03087 727 MobiDBLite consensus disorder prediction 38 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03087 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101217197 1108.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g03087 Bhi-Chr9:79659869 Bhi09g03089 Bhi-Chr9:79659869 0 dispersed
Bhi09g03087 Bhi-Chr9:79659869 Bhi09g03088 Bhi-Chr9:79659869 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00939 . 10 693 Mechanosensitive Ion Channel Family AT5G10490 56.5 2.6e-196 682.9
Bhi11g00900 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00903 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00902 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00901 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00904 . 1 604 Mechanosensitive Ion Channel Family AT5G10490 60.8 1.7e-187 653.7
Bhi04g00939 . 10 673 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-198 688.7
Bhi11g00900 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00903 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00902 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00901 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00904 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 56.8 4.5e-164 575.9
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G53470 55.9 8.2e-259 891.0
Bhi05g01668 . 91 959 Mechanosensitive Ion Channel Family AT1G53470 50.9 4.0e-237 818.9
Bhi10g01195 . 43 918 Mechanosensitive Ion Channel Family AT3G14810 53.6 1.4e-247 853.6
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.6 3.1e-279 958.7
Bhi05g01668 . 59 959 Mechanosensitive Ion Channel Family AT1G78610 55.3 1.1e-268 923.7
Bhi05g01669 . 59 726 Mechanosensitive Ion Channel Family AT1G78610 51.7 2.1e-171 600.5
Bhi10g01195 . 216 920 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-236 815.1
Bhi05g01668 . 273 957 Mechanosensitive Ion Channel Family AT2G17000 57.9 3.2e-220 762.7
Bhi05g01669 . 273 725 Mechanosensitive Ion Channel Family AT2G17000 59.7 2.4e-143 507.3
Bhi09g03087 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03089 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03088 . 65 718 Mechanosensitive Ion Channel Family AT5G19520 50.4 3.4e-173 606.3
Bhi02g01835 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 52.5 2.0e-194 676.8
Bhi09g03087 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03089 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03088 . 64 718 Mechanosensitive Ion Channel Family AT5G12080 54.2 5.5e-184 642.1
Bhi09g03090 . 79 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.8e-182 634.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57