Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03090 ATAATCTCCCTCGTTTTATTTTAGACCCGCCTTCACTGAATGATGACAGCAACAAAAACGTATATGAATTTTAGGCCCGCGGTTTGCAATAACAACCAGTTGTGTGAAGGCGGAGCGAAGCTCGTCGTTGAAGCTTTAACTTCAGTGGCTTTGTTCTTCCTTCTCTTTGTTTTTCTTGAAACGAAGTGGGTTTCTGTTCTTACCCATTTTTTCTGCTTCTGGGTGTAACTTTGCATTCAAGAAACTGTCTCTGCCTCTGTTTTCTGAGCTAGGTTTTGATTCTGATGGATGTGAACGGCAATAATCCTTCGAAAGCTGTTCGAAGAAGTTCGTCTCTAAAGGAAAGTGAAAATGAAGGCCATGTTGTGGTTGAAATTAGCAGCGTTTTGTCTTCCAAAGAAACCAAAGATGAAAATGGCTACTCTGTAACGAAGCAAAACAGAGTCGATTCACAGACCAAAGAGCCGACCGATTCGAGCATTGGCCATTCCAACGATTCATATCTCCCTCCCATTGCGAATGAGCCCCTGAAAATTCCCTATTCAAATGGAACCCTCACGCTCAGAAGATCTCTCAAAAGATCATACCTATCGAGACCCAAATCCAGATTTGGGGAACAGCCACGTTACACCGATTCAGATATGTTTGAGGAGAATGATGTGTCGTTGAGAGAACAAATCGGTGCAACTTCATCGAGAAGCTCTGTTCTCAACCCCCCGAATGCCCAATCTGAGGAAGAAGATGGTGAGGATATCGTCAAGACAGAGAAGTCGAACAAAAAGGACAAGAAAGTGAAGGTGAAGACATTGATTAAGTTGGTTGGAGCTTTTTGTTTAATTGCTTGCTTGGTGGCTAGCTTGACTGTTAACCGTTTGAAGAATTGCTTCTTTTGGGGTTTGAAGGTTTGGAAATGGTGTTTACTTGCTACTGTGATTTTTTGTGGAAAGATATTTACTACGTGGGTTATGCATGTGGTTGTCAATTTGATTGAGAGAAACTTTTTGCTTAAGAAAAACGTGCTTTATTTTGTTCATGGGTTGAGGAAGAGTGTCCGAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGCGTCGTTGTTTAATTGGAATAACCATAGGAGTTCAAGAACCGTTGGGAAGATCTTGGATGCTATTACATGGACTCTTGTTGCCCTTCTTATAGGGGCTGTTCTGTGGTTGGTAAAAACATTGTTGTTGAAAATACTGGCCTCCAAGTTCCATAAGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAAACCCTCTTGAAGTGTCCATTAAAGGAGGGGGCTGAAGGTACTGCCAAGTTCAGCTGTTGTCGATTTAGTTTGAAGAGTAAAAAATCAGACCATAAGAAGGTGATTGACACGGGAAAGATTCACCAGCTGCAGCGAGAGAAAGTTTCAGCTTGGACGATAAAGGTGTTGATCGAGGCAGTTACAAGTTCGCAGATGTCGATCTCACAAATACTGGATGAAAGTAGCAATGTTGCCGATGGTGAGATCACTGATGAAATGGAAATTGCCATAGCCGTTGCCTGCAAGATCTTCAAAAATATTGCTCATGGAAAAAAGTTCATACAAGAAGAAGATCTTCTGAAATTCATGGTCAAAGAAGAAATCGATCTTGTGTTACCACACTTTGAGGTAGATGAGACAAGGAAGATTGACAAGAAAGCTCTAATAAATTGGGTGGTGAAGGTTTATCAAGAGAGGAAAACTCTAGCACATGCCTTGAATGACACTAAAACAGCTGTGGAGGAATTGAATAATTTGGCAATAGCACTTATTATAATAGTAACAGCTGTCATATGGCTTCTGTTGATGGAAATTGCTACATCCAAAGTACTTGTTTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAACGCTTGCAAGACTGCATTTGAAGCTCTAATCTTTGTGTTCGTTATGCATCCATTCGATGTCGGGGACTTTTGTGTTGTTGATGGCGTCCAGCTGTTGGTTGAAGAAATGAACATCTTGACAACGGTCTTCTTGAAACTCAACAACGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCCATCACTAACTATTATAGAAGTCCGAACATGTTTGACACCATCGAATTCTCGATCAGTTTTGCAACGCCACTGGAGAGGATTGGAGCCATGAAAGAGAAAATAAAGAGGTATTTGGAGAAGAATCCACAACACTGGCATCCAAATCATAGTGTGGTAGTGAAAGAGATTGAAAATGTGAATAAGATAAAGATCGCTCTTTTTGCGAAGCACACCATGAATTTTCAAGACTGGTCTGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAGAATTTTTGAAGAACTGAAGATCAACTACAATCTTCTGCCTCAAACAGTTCATCTTTTTCCAGTTCAGGAGCAGTAAAGTCCAGAGAAGACCTTAAAGCTTCTGCTTCTGATACTTTGACTAAGAAATGGTTAGCTTGTGCTAGCTGCTTTGTTAACTTAGTTAGAGCCAGTAGTAGTATTTACTAAAGAGAATCATAGGACTGTTAACTTACCTAGGCTAAGCTACTAACTGGAAATATACAACTTCTAAGACTGTTGTAGCCATGTAATAATGTTAATAATGTTGCCATGTTAGGGTTACACTCATCTTACTAATGTTTAGCCATGTAATTAATTAATATATATGTTTATTAAGTGGAGTCTACTATTTCATTTGTTTCAATGAAAA 2792 40.15 MDVNGNNPSKAVRRSSSLKESENEGHVVVEISSVLSSKETKDENGYSVTKQNRVDSQTKEPTDSSIGHSNDSYLPPIANEPLKIPYSNGTLTLRRSLKRSYLSRPKSRFGEQPRYTDSDMFEENDVSLREQIGATSSRSSVLNPPNAQSEEEDGEDIVKTEKSNKKDKKVKVKTLIKLVGAFCLIACLVASLTVNRLKNCFFWGLKVWKWCLLATVIFCGKIFTTWVMHVVVNLIERNFLLKKNVLYFVHGLRKSVRVTLWLTLVLVTWASLFNWNNHRSSRTVGKILDAITWTLVALLIGAVLWLVKTLLLKILASKFHKNRFFDRIQESIFHHHVLQTLLKCPLKEGAEGTAKFSCCRFSLKSKKSDHKKVIDTGKIHQLQREKVSAWTIKVLIEAVTSSQMSISQILDESSNVADGEITDEMEIAIAVACKIFKNIAHGKKFIQEEDLLKFMVKEEIDLVLPHFEVDETRKIDKKALINWVVKVYQERKTLAHALNDTKTAVEELNNLAIALIIIVTAVIWLLLMEIATSKVLVFLLSQLAVAAFMFGNACKTAFEALIFVFVMHPFDVGDFCVVDGVQLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPNMFDTIEFSISFATPLERIGAMKEKIKRYLEKNPQHWHPNHSVVVKEIENVNKIKIALFAKHTMNFQDWSEKNRRRTELVMELKRIFEELKINYNLLPQTVHLFPVQEQ 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 79739624 79743306 - XM_039041157.1 Bhi09g03090 45707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03090 731 Gene3D - 569 618 IPR023408 -
Bhi09g03090 731 SUPERFAMILY Sm-like ribonucleoproteins 558 618 IPR010920 -
Bhi09g03090 731 MobiDBLite consensus disorder prediction 49 72 - -
Bhi09g03090 731 PIRSF Memb_At2g17000 2 731 IPR016688 -
Bhi09g03090 731 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 25 725 IPR016688 -
Bhi09g03090 731 Pfam Mechanosensitive ion channel 511 715 IPR006685 GO:0016020|GO:0055085
Bhi09g03090 731 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 25 725 - -
Bhi09g03090 731 MobiDBLite consensus disorder prediction 1 76 - -
Bhi09g03090 731 MobiDBLite consensus disorder prediction 134 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03090 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101216955 1036.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01835 Bhi-Chr2:49759567 Bhi09g03090 Bhi-Chr9:79739624 0 dispersed
Bhi09g03088 Bhi-Chr9:79659869 Bhi09g03090 Bhi-Chr9:79739624 0 dispersed
Bhi09g03090 Bhi-Chr9:79739624 Bhi12g01438 Bhi-Chr12:46336647 2.73E-170 dispersed
Bhi09g03089 Bhi-Chr9:79659869 Bhi09g03090 Bhi-Chr9:79739624 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g144 Blo01g01450 Blo12g01027 . Bda03g00130 . . Bma04g00265 . . . Cma01g01705 . . . . . . . . . . . . . Cla05g01618 Cam05g1731 Cec05g1736 Cco05g1792 Clacu05g1720 Cmu05g1604 Cre05g1731 Cone4ag1693 . . . Lsi04g01394 . . . . . . . . Bpe04g00114 . . . Cmo01g01806 . . . Car01g01323 . . Cpe02g00286 Bhi09g03090 . . . . . . . . . . . . . . . . Cme07g00186
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00939 . 10 693 Mechanosensitive Ion Channel Family AT5G10490 56.5 2.6e-196 682.9
Bhi11g00900 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00903 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00902 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00901 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00904 . 1 604 Mechanosensitive Ion Channel Family AT5G10490 60.8 1.7e-187 653.7
Bhi04g00939 . 10 673 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-198 688.7
Bhi11g00900 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00903 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00902 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00901 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00904 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 56.8 4.5e-164 575.9
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G53470 55.9 8.2e-259 891.0
Bhi05g01668 . 91 959 Mechanosensitive Ion Channel Family AT1G53470 50.9 4.0e-237 818.9
Bhi10g01195 . 43 918 Mechanosensitive Ion Channel Family AT3G14810 53.6 1.4e-247 853.6
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.6 3.1e-279 958.7
Bhi05g01668 . 59 959 Mechanosensitive Ion Channel Family AT1G78610 55.3 1.1e-268 923.7
Bhi05g01669 . 59 726 Mechanosensitive Ion Channel Family AT1G78610 51.7 2.1e-171 600.5
Bhi10g01195 . 216 920 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-236 815.1
Bhi05g01668 . 273 957 Mechanosensitive Ion Channel Family AT2G17000 57.9 3.2e-220 762.7
Bhi05g01669 . 273 725 Mechanosensitive Ion Channel Family AT2G17000 59.7 2.4e-143 507.3
Bhi09g03087 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03089 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03088 . 65 718 Mechanosensitive Ion Channel Family AT5G19520 50.4 3.4e-173 606.3
Bhi02g01835 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 52.5 2.0e-194 676.8
Bhi09g03087 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03089 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03088 . 64 718 Mechanosensitive Ion Channel Family AT5G12080 54.2 5.5e-184 642.1
Bhi09g03090 . 79 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.8e-182 634.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57