Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03180 GTAGTATTGACGTTTTTTTGTGACATTAATATTTTAACCGAACCACGGTTAAAACTTACTCCTCTCTTTCCTTTCAATGGGTTTATAATTTATAAATTCGCAGCCGATCTTTTTGTTTCTTCATTCACAGAGTCGTCGGCTGAAAGATGATGATCGGAGAACAATCTAGATTCAATCACACCATTCAAGTTCCTCCATGGGACCCACTTGAAGACCACCATATGACCGGAATTTCCTCGCCGGTCTTCATCTCTGGTGGGGTCGACTCATTTATCGACTCCTTTTCTTCCATTCACCGTTACCTTCCCTCCGCGGCGGATTCCGATGATTTGGATGCGGTAGCTGAGGCGGTGGATGGTTTCTCCTGTGACCATTTTCGGATGTTCGAGTTCAAAATACGGAGATGCGCACGTGGGAGGTCGCACGATTGGACGGAGTGTCCGTACGCGCATCCCGGCGAGAAAGCTCGCCGGCGTGATCCGAGGAAGTATCATTACTCCGGTACGGCTTGTCCGGAGTTTCGTAAAGGGAATTGCAAAAAAGGGGATTCTTGCGATTTCGCTCACGGGATTTTCGAGTGTTGGCTTCATCCAGCTCGGTACCGGACTCAGCCTTGTAAGGACGGATTAGCCTGTCGCCGTCGTGTCTGTTTTTTCGCACACACGCCGGAACAGCTTCGGGTTCTGCCGCAGCAGAGCCCGAGAACCCCTGTTTCGGCCGATTCTGTTGATGGGTCATCACGAATTGCACACGCATTCGATTCCTATTTCGCCAAAGGATCATTTGTGACTTCACCCACTTCAATTCTATCAACGCCCCCTGTTTCTCCGCCATCCGATTCACCTCCCCTATCGCCGAATTGTCCGTTTAATTCGATGAATGGATTGGTTTCGTGTATGCGTAATCTTCAACTTGGGAAATCGAAAGCAACCCCTCATTGGGGGAGGATTCAATTGGGGGGACAGAATCCACTCTCTCCCTCCGGCTCTGGTTTGTACAGCTTACCGTCAACTCCGACCACCGGAAATTACGAATTGTGGGGGAAGAGTTACGAGGAAGAACCTGCAATGGAGAGAGTGGAATCTGGGAGAGACCTAAGAGCTAAAATGTATGCAAAACTCAGCAAAGACAACTCTGTGAAGGAGGTGGATTCAACATTCACACCCGATGTCGGATGGGTTTCGGAGCTATTAATGTGAAACGGGTAAAGAAAAAAGGGAAAAAAAACTTCATCAATCGGTGGCCTTTTGGGGTTTGTTTGTGAATTCATATTTCGATGGTGGGATTGTGCAAATTTTCAGCGTTTTTTTAAAATTGTATTTAAATTTAATTAGCAGGGAGAAGGAAAGAAAGAAATTACTCTGTTTTTGTTGTAGATATGAAAAGACGGAATTTTTAGGCTGCCGAGAAGTAAGGTACATAAGGAGGTTGTTGTCGGCTGGGGTTTGATCGAATTTTTAATTGTAATAATATTTTCGGATTTTCAGTAAATGATGTGAAGATCTTCATCTTGTCTGATTAAAATTCGAA 1530 45.56 MMIGEQSRFNHTIQVPPWDPLEDHHMTGISSPVFISGGVDSFIDSFSSIHRYLPSAADSDDLDAVAEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDFAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLPQQSPRTPVSADSVDGSSRIAHAFDSYFAKGSFVTSPTSILSTPPVSPPSDSPPLSPNCPFNSMNGLVSCMRNLQLGKSKATPHWGRIQLGGQNPLSPSGSGLYSLPSTPTTGNYELWGKSYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEVDSTFTPDVGWVSELLM 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 81372786 81374315 - XM_039044096.1 Bhi09g03180 45797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03180 350 PANTHER UNKEMPT FAMILY MEMBER 8 349 IPR045234 -
Bhi09g03180 350 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 349 - -
Bhi09g03180 350 SMART c3hfinal6 116 142 IPR000571 GO:0046872
Bhi09g03180 350 SMART c3hfinal6 151 174 IPR000571 GO:0046872
Bhi09g03180 350 ProSiteProfiles Zinc finger C3H1-type profile. 117 143 IPR000571 GO:0046872
Bhi09g03180 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 121 141 IPR000571 GO:0046872
Bhi09g03180 350 Gene3D - 112 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01952 Bhi-Chr5:60517018 Bhi09g03180 Bhi-Chr9:81372786 2.59E-65 dispersed
Bhi06g01669 Bhi-Chr6:47402705 Bhi09g03180 Bhi-Chr9:81372786 1.26E-108 dispersed
Bhi09g03180 Bhi-Chr9:81372786 Bhi11g01385 Bhi-Chr11:40606187 5.55E-55 dispersed
Bhi02g01932 Bhi-Chr2:51940094 Bhi09g03180 Bhi-Chr9:81372786 1.85E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2009 PF00642 zf-CCCH 6.00E-05 CL0537 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03180 - - csv:101205433 670.233