Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03189 AAAAGTTCCTGTCTAGTCTTTGGCGAAATGGTTCGGCAGGGACTATAACGTACAAGAGAAAACCGTTGAATTGAAGCCAAGGCTGCGGGACCACTTGAATTCAACTTGTACAAGTGGGTACAACTCATTGGCTCCTCCACCTACAACCCGGACGCCACGTCGGTTCCCGCGTTATTCCCTCTCTAATAGTTCAATGTTTTTATTTTTTAACACAAGCGCACCGGCGGTGAGGGCATATTTTCCTCCGCCGCGAGCGCTTAATTTTCTCCAAATTCCCTGAGAACCTCGTCCAAATCCCGGACGAGGGATGACGATTCTCGTTTCCGCCGACCGCAAGTATCGGCGGAGCCCTAAAAAGCCCTTACTTCCTGAGAAATGCGACCACCAGGAGGCGGTCGAAGTAGGGTTAGATGGCGCGTCCTTCTCCGGCGCCGTCTTCAACCTCTCGAGCACCATTGTCGGCGCCGGAATCATGGCTCTCCCAGCCGCCGTGAAGCAATTAGGTCTAATTCCAGGCTTGGTCTTGATCATGCTCGGATCGACTTTGACGGAGTTGTCAATTGACTTCATCCTAAAATTCTCTCGGGCGTCCAAATCCGTTTCATACGCCGGCGCCGTCGGCGACTCTCTCGGAAGCGCCGGACGGACCCTCTTGCAGGTTTGCATCGTGGTCAATAACTTGGGCATGCTCGTCGTCTACATGATCATCATTGGTGATGTGTTTTCAGGAACATCGGCAAATAACATCCATCATAAGGGTGTAATGGAAGAATGGTTTGGTCAACATTGGTGGACCAGCCGCATATCTTTAATGCTGCTTACGACGCTTCTGATTTTTGCGCCTCTAATATCCTTCAAGCGTGTAGATTCCTTGAGATACACATCAGCTTTATCAGTGGGCTTGGCCATTGTCTTCGTGGCAATCACTGCTGGAGTAGCAATTGCGAAACTGATGAATGGGAGTATTGGAATGCCACGTCTGATGCCTAAAGTTACTGACCAGGCATCATTTTGGCAACTTTTTACCACTGTTCCAATCCTAGTCACTGCCTATATCTGTCAACATAATGTTCACCCTATTGAGAATGAGCTAAAAGATCCCACCCAAATGAAGTCAATAGTTCGAACATCTCTAACAATATGCTCAACTGTATATATCACAACGAGCTTCTTCGGATTTCTCCTGTTTGGAGACCAAACGCTGGATGATGTACTTGCCAATTTTGATGGAGATCTTGGACTTCCATACAGCTCATTGCTTGATGATGTTGTAAGAGTGAGCTATGGCATCCACCTGATGCTTGTATTTCCCATTGTTTTTTTCTCCCTTCGCCTCAACATTGACGGTCTGCTCTTTCCCTATGCCATACCTATTTCTTTTGATAACCGGCGATTCTTCTCAATAACTACAGCTCTCATGAGTTTCATCTTCATTGGAGCTAACTTTGTTCCCAGCATCTGGGATGCCTTTCAGCTCACTGGTGCCACTGCTGCCATCTCTGTTGGGTTCATTTTCCCCGCTGCTCTTGTCCTCAGGGACACTTGTGGGATAGCATCAAAGAAAGACAGACTGATAGCATGGATAATGTTCCTATTAGCTGTTTTGTCAAGTATTGTCGCAATCTCATGCGATATCTATAGTTCTTACGTGATCAAAAAACACGCTTGACATAGAAGAAGAAGAAACCGTTTTCTCATGCCAACTCTTCCGCTAAATGATCGAGGCTCAATGTCAACATCAGAGATGCACAGAAGAGCCATTTTTTAGATTTTTCGTCCCATCAAAAGCCAGTTTGGCTGGGGCCTTGTTTGTAACAAGTAACAACCATATAAGCAAAATGTTGATTGATATATTGTAGGAACACTTGGTAATTAAAACCACAAGGTGCCGTTGTCTGAGAAAGATCTTCATTGGCCTCACTCTTGTGGCCGTTGGTTGGCCCAATATGCACAAATTCTACTGTCAA 1967 46.16 MTILVSADRKYRRSPKKPLLPEKCDHQEAVEVGLDGASFSGAVFNLSSTIVGAGIMALPAAVKQLGLIPGLVLIMLGSTLTELSIDFILKFSRASKSVSYAGAVGDSLGSAGRTLLQVCIVVNNLGMLVVYMIIIGDVFSGTSANNIHHKGVMEEWFGQHWWTSRISLMLLTTLLIFAPLISFKRVDSLRYTSALSVGLAIVFVAITAGVAIAKLMNGSIGMPRLMPKVTDQASFWQLFTTVPILVTAYICQHNVHPIENELKDPTQMKSIVRTSLTICSTVYITTSFFGFLLFGDQTLDDVLANFDGDLGLPYSSLLDDVVRVSYGIHLMLVFPIVFFSLRLNIDGLLFPYAIPISFDNRRFFSITTALMSFIFIGANFVPSIWDAFQLTGATAAISVGFIFPAALVLRDTCGIASKKDRLIAWIMFLLAVLSSIVAISCDIYSSYVIKKHA 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 81741126 81746075 + XM_039040217.1 Bhi09g03189 45806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03189 453 Pfam Transmembrane amino acid transporter protein 37 437 IPR013057 -
Bhi09g03189 453 PANTHER AMINO ACID TRANSPORTER 10 445 - -
Bhi09g03189 453 PANTHER AMINO ACID TRANSPORTER AVT6A 10 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03189 K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2 - csv:101204458 831.247
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02225 Bhi-Chr1:53201195 Bhi09g03189 Bhi-Chr9:81741126 0 dispersed
Bhi07g00486 Bhi-Chr7:20866577 Bhi09g03189 Bhi-Chr9:81741126 1.92E-136 dispersed
Bhi07g00487 Bhi-Chr7:20951154 Bhi09g03189 Bhi-Chr9:81741126 1.08E-138 dispersed
Bhi09g00504 Bhi-Chr9:10703466 Bhi09g03189 Bhi-Chr9:81741126 1.83E-117 dispersed
Bhi09g03189 Bhi-Chr9:81741126 Bhi05g01578 Bhi-Chr5:52556340 4.79E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g02786 . 58 477 Amino Acid/Auxin Permease AAAP Family AT2G41190 69.2 1.2e-161 567.4
Bhi11g02785 . 58 477 Amino Acid/Auxin Permease AAAP Family AT2G41190 69.2 1.2e-161 567.4
Bhi11g02789 . 83 497 Amino Acid/Auxin Permease AAAP Family AT2G41190 55.7 9.2e-130 461.5
Bhi11g02788 . 83 497 Amino Acid/Auxin Permease AAAP Family AT2G41190 55.7 9.2e-130 461.5
Bhi01g02225 . 3 462 Amino Acid/Auxin Permease AAAP Family AT3G30390 67.2 8.8e-172 600.9
Bhi09g03189 . 18 453 Amino Acid/Auxin Permease AAAP Family AT3G30390 59.9 4.4e-147 518.8
Bhi11g02996 . 40 432 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.4 2.1e-132 469.9
Bhi11g02997 . 41 435 Amino Acid/Auxin Permease AAAP Family AT3G28960 59.6 2.5e-130 463.0
Bhi01g02225 . 21 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 68.0 7.2e-166 581.3
Bhi09g03189 . 35 452 Amino Acid/Auxin Permease AAAP Family AT5G38820 59.3 3.6e-141 499.2
Bhi09g00504 . 3 491 Amino Acid/Auxin Permease AAAP Family AT1G80510 65.3 3.8e-165 578.9
Bhi07g00820 . 57 562 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.8 5.0e-129 459.1
Bhi04g01343 . 55 551 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.1 5.5e-128 455.7
Bhi04g01344 . 55 551 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.1 5.5e-128 455.7
Bhi07g00817 . 57 530 Amino Acid/Auxin Permease AAAP Family AT5G02180 52.7 2.8e-124 443.4
Bhi07g00819 . 57 530 Amino Acid/Auxin Permease AAAP Family AT5G02180 52.7 2.8e-124 443.4
Bhi07g00818 . 57 530 Amino Acid/Auxin Permease AAAP Family AT5G02180 52.7 2.8e-124 443.4
Bhi07g00816 . 57 530 Amino Acid/Auxin Permease AAAP Family AT5G02180 52.7 2.8e-124 443.4
Bhi07g00817 . 57 530 Amino Acid/Auxin Permease AAAP Family AT3G09330 50.1 2.5e-114 410.2
Bhi07g00819 . 57 530 Amino Acid/Auxin Permease AAAP Family AT3G09330 50.1 2.5e-114 410.2
Bhi07g00818 . 57 530 Amino Acid/Auxin Permease AAAP Family AT3G09330 50.1 2.5e-114 410.2
Bhi07g00816 . 57 530 Amino Acid/Auxin Permease AAAP Family AT3G09330 50.1 2.5e-114 410.2
Bhi07g00817 . 57 530 Amino Acid/Auxin Permease AAAP Family AT3G09340 50.7 8.7e-115 411.8
Bhi07g00819 . 57 530 Amino Acid/Auxin Permease AAAP Family AT3G09340 50.7 8.7e-115 411.8
Bhi07g00818 . 57 530 Amino Acid/Auxin Permease AAAP Family AT3G09340 50.7 8.7e-115 411.8
Bhi07g00816 . 57 530 Amino Acid/Auxin Permease AAAP Family AT3G09340 50.7 8.7e-115 411.8
Bhi07g00817 . 43 495 Amino Acid/Auxin Permease AAAP Family AT2G39130 70.0 6.8e-178 621.3
Bhi07g00819 . 43 495 Amino Acid/Auxin Permease AAAP Family AT2G39130 70.0 6.8e-178 621.3
Bhi07g00818 . 43 495 Amino Acid/Auxin Permease AAAP Family AT2G39130 70.0 6.8e-178 621.3
Bhi07g00820 . 43 495 Amino Acid/Auxin Permease AAAP Family AT2G39130 70.0 6.8e-178 621.3
Bhi07g00816 . 43 495 Amino Acid/Auxin Permease AAAP Family AT2G39130 70.0 6.8e-178 621.3
Bhi04g01343 . 1 485 Amino Acid/Auxin Permease AAAP Family AT2G39130 65.0 6.8e-170 594.7
Bhi04g01344 . 1 485 Amino Acid/Auxin Permease AAAP Family AT2G39130 65.0 6.8e-170 594.7
Bhi11g02997 . 99 434 Amino Acid/Auxin Permease AAAP Family AT5G15240 59.9 1.2e-109 394.0
Bhi11g02996 . 96 431 Amino Acid/Auxin Permease AAAP Family AT5G15240 59.9 1.2e-109 394.0
Bhi07g00487 . 10 427 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.1 5.3e-134 475.3
Bhi07g00486 . 10 426 Amino Acid/Auxin Permease AAAP Family AT3G56200 60.3 5.3e-134 475.3
Bhi07g00817 . 48 509 Amino Acid/Auxin Permease AAAP Family AT3G54830 65.2 1.8e-163 573.5
Bhi07g00819 . 48 509 Amino Acid/Auxin Permease AAAP Family AT3G54830 65.2 1.8e-163 573.5
Bhi07g00818 . 48 509 Amino Acid/Auxin Permease AAAP Family AT3G54830 65.2 1.8e-163 573.5
Bhi07g00820 . 48 509 Amino Acid/Auxin Permease AAAP Family AT3G54830 65.2 1.8e-163 573.5
Bhi07g00816 . 48 509 Amino Acid/Auxin Permease AAAP Family AT3G54830 65.2 1.8e-163 573.5
Bhi04g01343 . 1 499 Amino Acid/Auxin Permease AAAP Family AT3G54830 60.1 1.0e-158 557.8
Bhi04g01344 . 1 499 Amino Acid/Auxin Permease AAAP Family AT3G54830 60.1 1.0e-158 557.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30