Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03353 TTCTGATTCTTTTACCCTTTTTGGTTAGGGTGTAGGTGTACATTAAAATCTGCTTCATTCTTTGTTTCGTTTGTTCCATTGTTAATACGGAGGAAGATAAGATGCAAACCAACGGCTCTGATTCGCAGCCGCAGGAATCAAATCAACGGCATCAACAGCCACAGTCATGGATGCCAATGCAGTATCCGCCGCCGGCCATGGTAATGCCGCACCATATGATGACGCCGCAGCATTACATGGCGCCGTCACTCCGCCGCCGTATATGCATTATCATCACCAATATCACCATCATCATCTTCCTATTCAGCATTCGCAACCGTTACAACGATCTAGCGGCGGAAATAAGACGATTTGGATCGGTGACTTGCATCATTGGATGGACGAGAGTTACCTCCATTCTTGCTTTTCTTCCGTCGGCGAGATTTCATCTATGAAGGTTATTCGTAATAAGCATACTGGTTTGTCTGAAGGGTATGGGTTTGTAGAATTTTTTTCTCATGCAACAGCTGAGAAAGTTCTTCAGAATTATTCTGGAGTGTTCATGCCAAGTACAGAGCAGACTTTCCGCCTGAATTGGGCGACATTTAGCACTGGTGACAAGCGATCGGATAATGATCCCGATCTTTCTATTTTCGTTGGAGACTTAGCTGCAGATGTTACTGATTCTATGTTGTATGAAACATTTTCTAGTAAATTTCCTTCTGTTAAAGGAGCAAAAGTTGTAATTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTGCGGTTTGGAGATGACAATGAAAGGTCTCAGGCCATGACTGAAATGAATGGTGTATATTGTTCAAGCAGACCTATGCGCATTGGTGCAGCAACACCCAGAAAGTCTTCTGGATATCAGCAACAGCATTCTTCACAAGGAGGATATTCAACAAATGGTTCCTTTAGCCAAGGTCTCCAATCTGAAGGGGATTCTGCAAATACAACTATATTTGTTGGTGGGCTTGATCCTAATGTCACCGATGAAGATCTGAGGCAACCTTTCTCGCAGTATGGTGAGATAGTCTCTGTTAAAATACCAGTTGGTAAAGGATGTGGGTTTGTCCAATTTGCCAACAGAAGTGACGCTGAAGAGGCTTTGCAGAAACTAAATGCAACTGTAATTGGCAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAATCCAGCAAATAAGCAGTTTAGAGATTTTGGGAACCAGTGGAATGGAGCTTACTACGGAGGGCACATATATGACGGCTATGGATATGGTTTGCCATCTCCTCACGATCCAAGTATGTATCACGCAGCTTACGGAGCTTACACTGTCTATGGAAGTCATCAGCAACAAGTAGAACAGCTGAAGTTACTTTAGCTTCTGAATTCACTTGGTTTTAGATTCTTTTTTCCTTCCATATTAATCATCCTCCATCTGCTTAGTGGAACTGAATTTTGATGACCTAAGCTAGTTCTCTAATTTCGTAGGGGATATTTATATATTTATTTCATTCAGATTGTTACTCTTACTGAGATTGATAACAAACTTATTTAGCAGAATATATATGATCTCGCAATAGTGTATGCATGTTACAA 1590 41.76 MDANAVSAAGHGNAAPYDDAAALHGAVTPPPYMHYHHQYHHHHLPIQHSQPLQRSSGGNKTIWIGDLHHWMDESYLHSCFSSVGEISSMKVIRNKHTGLSEGYGFVEFFSHATAEKVLQNYSGVFMPSTEQTFRLNWATFSTGDKRSDNDPDLSIFVGDLAADVTDSMLYETFSSKFPSVKGAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQHSSQGGYSTNGSFSQGLQSEGDSANTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRSDAEEALQKLNATVIGKQTVRLSWGRNPANKQFRDFGNQWNGAYYGGHIYDGYGYGLPSPHDPSMYHAAYGAYTVYGSHQQQVEQLKLL 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 85750866 85754690 + XM_039040208.1 Bhi09g03353 45970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03353 401 SMART rrm1_1 154 228 IPR000504 GO:0003723
Bhi09g03353 401 SMART rrm1_1 268 335 IPR000504 GO:0003723
Bhi09g03353 401 SMART rrm1_1 61 136 IPR000504 GO:0003723
Bhi09g03353 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 332 IPR000504 GO:0003723
Bhi09g03353 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 224 IPR000504 GO:0003723
Bhi09g03353 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 129 IPR000504 GO:0003723
Bhi09g03353 401 Gene3D - 258 369 IPR012677 -
Bhi09g03353 401 Gene3D - 140 257 IPR012677 -
Bhi09g03353 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 232 IPR000504 GO:0003723
Bhi09g03353 401 MobiDBLite consensus disorder prediction 229 260 - -
Bhi09g03353 401 CDD RRM2_SECp43_like 152 231 - -
Bhi09g03353 401 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 42 395 - -
Bhi09g03353 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 140 IPR000504 GO:0003723
Bhi09g03353 401 SUPERFAMILY RNA-binding domain, RBD 21 141 IPR035979 GO:0003676
Bhi09g03353 401 CDD RRM1_SECp43_like 61 141 - -
Bhi09g03353 401 CDD RRM3_NGR1_NAM8_like 266 337 - -
Bhi09g03353 401 MobiDBLite consensus disorder prediction 233 260 - -
Bhi09g03353 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 339 IPR000504 GO:0003723
Bhi09g03353 401 SUPERFAMILY RNA-binding domain, RBD 257 359 IPR035979 GO:0003676
Bhi09g03353 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 42 395 - -
Bhi09g03353 401 SUPERFAMILY RNA-binding domain, RBD 135 254 IPR035979 GO:0003676
Bhi09g03353 401 Gene3D - 59 139 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03353 - - - csv:101211504 677.167
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi04g00313 Bhi09g03353 CCT
Bhi04g00313 Bhi09g03353 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01559 Bhi-Chr6:45949813 Bhi09g03353 Bhi-Chr9:85750866 2.35E-14 dispersed
Bhi09g00296 Bhi-Chr9:6342711 Bhi09g03353 Bhi-Chr9:85750866 1.06E-14 dispersed
Bhi09g03353 Bhi-Chr9:85750866 Bhi10g02092 Bhi-Chr10:52488776 1.17E-156 dispersed
Bhi11g01609 Bhi-Chr11:46319795 Bhi09g03353 Bhi-Chr9:85750866 8.62E-08 dispersed
Bhi11g01610 Bhi-Chr11:46320076 Bhi09g03353 Bhi-Chr9:85750866 8.62E-08 dispersed
Bhi06g01352 Bhi-Chr6:41414877 Bhi09g03353 Bhi-Chr9:85750866 1.64E-12 transposed
Bhi10g01259 Bhi-Chr10:29486571 Bhi09g03353 Bhi-Chr9:85750866 8.59E-09 transposed
Bhi12g00462 Bhi-Chr12:14858657 Bhi09g03353 Bhi-Chr9:85750866 5.45E-148 transposed
Bhi04g00313 Bhi-Chr4:7321991 Bhi09g03353 Bhi-Chr9:85750866 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117