Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03449 AAGTGAAAGCCCGTAATTTTCTTGTAGAATTATTGCAAATTGCGATAAAGAAAGAAAAGGGGAAAAAAAAAACAAAAGGAAAGAAGAAGAAGAAAGAGAGAAAGAAGAGCGAAAGGAAGTTCCATTAGAACAACAATTTGCAATCTTTTGATTTCGCGGCTCTCGCGAAGCCTCTCTCTCTGTGTGCAAATAACAGAGTGTAAAGGAGGAAGAGATCTATGGTGTTATTGCTCAGAAGAAATCTATTCCTCCTAATGTTCTTTTGAATCGCATTCTTGGATTTGATATTTGAGGCTGCTGTTGGGATTGGTGAAGACGAACTTTGGTCGTGGATTTGAAGTTGCTGGTTGGATTATTTCCTACAAAAATGAGGGAAATCTGAAGATGAGATGGTTGAGTTGGTCTTAAATTGTGGTTTAGTTTGGCAATCCAGTGTGTGCAAAGTGGGTGAAAAGTGAAAAAGATTGATAGAACGAAATGTCTGATGTGGCGAGCATAGCAGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAAGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTCCACCAGACGAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCGCCACTTGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACACTGAAGGAAAAATTCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTATCTGCTCAATTAACAAGGACAATATCAAGGAGAAAGACATTTGTAGGAACTCCATTTTGGATGGCGCCAGAGGTAATTCAGAATTCTGAAGGATACAATGAGAAGGCAGATATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCCGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGAGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGCCCTATGAAAGAATTAGTGTCACTGTGTCTGAAGAAAATACCTGCTGAGAGACCCAGTGCGAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAACGTCCGAAGTACCAAATAAAGGAAGAAGATGCAGCAACAAATGGCCCTAGAGCTATAGGTGAAACATCAGACACTGTGAAAGTTTCAAGAAATGTTAGAGAAGAAACTGTTCGTGCCAGCAACCAGAGTAAAACTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGCTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCTAGCTGCGTCAGGATATGCACCACGCGATGTATCAGAAAACACTAGAGATTCATACAGTACTGGAGATGCTAGTGATGATGAAGAGTTATCTGTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCAAGGCGATCTCAAGCATCTACTCAATTTCATAATGAAAGCAGTCCGTCTGGAAGTGCGCAAGCATATATCGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTCTGATTCTCCTCAGACTCCAAAATCCAGATTGGGAATTCAAGAAAGGACTTCAAGTTTTTCTCCTGAAGATAGTGCATCAAATCTTGCGGAGGCAAAAGCTGCGATTCAAGCAGGATTGAAGAAAGCTAATGCAAGGGATAGATCAGCTAATAAACTCAACGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTCTTTGATGCGCCAAGAGCGTTGAAACCATCTCTATCAATTGATGAGGAAGAAAGTGCAAAAATAGCATCGTCTTCTGCACCATTATCAGTTTTGTTTATGTCATCCTTGAAAGAGGTAGTTGCAGATGATTCGGAAGGATCGCCTGCTCGTAATGTAATTAATGCACTTATAAACCTGGAACATGTAAAGCCTGGATCATGTGAGGTTCTTGTTACCAAGTTGCTTCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAGGATTTACAAGACTTGGCAACTCGCTTATTCACTAAGGCAAAGACAGTTCCTGAAGATGCACAAAATGTCACAGATTCTGATAGCAGCAAAAAGCAACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCGAGGGATCTGAGTCCAGCTTAAAAGGGAGAAAAATTGTGTATTTGTTTGATATTTTTTATTCTTGACAGTGCATTATTTGAGTTGATGTACATACGTCGTTGTAAGAAATGGTGTATTAATTATTAATTGTGATTTTTCCTTATGAAATTTTTGTTTTGCTATTCATTGCATTGACATTTGTATTATTATTAAAACCTGAGATTGATGAATAATTGCTATTGAAATGCTGTGAATAGTGGAGAGTTTGAATTTTGAACA 2790 39.86 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEEDAATNGPRAIGETSDTVKVSRNVREETVRASNQSKTPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQAAPSRVAESGNWLAASGYAPRDVSENTRDSYSTGDASDDEELSVSGSGTVVIRSPRRSQASTQFHNESSPSGSAQAYIEDTSFSGTVVMRGQRDDSDSPQTPKSRLGIQERTSSFSPEDSASNLAEAKAAIQAGLKKANARDRSANKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALKPSLSIDEEESAKIASSSAPLSVLFMSSLKEVVADDSEGSPARNVINALINLEHVKPGSCEVLVTKLLQKLASSKESSLKDLQDLATRLFTKAKTVPEDAQNVTDSDSSKKQPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 87311112 87325500 + XM_039041699.1 Bhi09g03449 46066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03449 691 MobiDBLite consensus disorder prediction 455 489 - -
Bhi09g03449 691 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi09g03449 691 MobiDBLite consensus disorder prediction 506 525 - -
Bhi09g03449 691 MobiDBLite consensus disorder prediction 384 441 - -
Bhi09g03449 691 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 689 - -
Bhi09g03449 691 MobiDBLite consensus disorder prediction 317 331 - -
Bhi09g03449 691 SUPERFAMILY Protein kinase-like (PK-like) 13 329 IPR011009 -
Bhi09g03449 691 MobiDBLite consensus disorder prediction 455 487 - -
Bhi09g03449 691 CDD STKc_MST3_like 14 287 - -
Bhi09g03449 691 MobiDBLite consensus disorder prediction 643 665 - -
Bhi09g03449 691 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 689 - -
Bhi09g03449 691 MobiDBLite consensus disorder prediction 389 441 - -
Bhi09g03449 691 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Bhi09g03449 691 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi09g03449 691 MobiDBLite consensus disorder prediction 501 541 - -
Bhi09g03449 691 Gene3D Transferase(Phosphotransferase) domain 1 12 301 - -
Bhi09g03449 691 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi09g03449 691 MobiDBLite consensus disorder prediction 289 372 - -
Bhi09g03449 691 Coils Coil 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03449 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - csv:101214412 1261.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g03449 Bhi-Chr9:87311112 Bhi06g00518 Bhi-Chr6:11843713 5.61E-72 dispersed
Bhi09g03448 Bhi-Chr9:87311110 Bhi09g03449 Bhi-Chr9:87311112 0 tandem
Bhi09g03449 Bhi-Chr9:87311112 Bhi09g03450 Bhi-Chr9:87311993 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g03449 . 1 689 MAP Kinase Kinase Kinase Kinase AT1G53165 63.7 9.3e-226 780.8
Bhi09g03448 . 1 690 MAP Kinase Kinase Kinase Kinase AT1G53165 63.6 2.3e-224 776.2
Bhi09g03450 . 1 601 MAP Kinase Kinase Kinase Kinase AT1G53165 60.5 2.7e-180 629.8
Bhi07g00260 . 268 528 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 5.2e-67 253.4
Bhi09g03449 . 1 688 MAP Kinase Kinase Kinase Kinase AT3G15220 65.6 2.8e-230 795.8
Bhi09g03448 . 1 689 MAP Kinase Kinase Kinase Kinase AT3G15220 65.5 5.3e-229 791.6
Bhi09g03450 . 1 600 MAP Kinase Kinase Kinase Kinase AT3G15220 62.3 8.9e-184 641.3
Bhi07g00260 . 268 528 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 2.3e-67 254.6
Bhi07g00260 . 3 840 MAP Kinase Kinase Kinase Kinase AT1G69220 58.1 1.4e-241 833.6
Bhi06g00519 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00521 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00523 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00520 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00522 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00524 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 7.2e-255 877.5
Bhi06g00517 . 1 664 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 9.7e-252 867.1
Bhi06g00518 . 1 547 MAP Kinase Kinase Kinase Kinase AT5G14720 69.2 8.8e-221 764.2
Bhi09g03450 . 1 191 MAP Kinase Kinase Kinase Kinase AT5G14720 50.5 2.6e-47 188.0
Bhi06g00518 . 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 65.4 7.7e-138 488.8
Bhi11g01446 . 2 348 MAP Kinase Kinase Kinase Kinase AT4G24100 62.8 2.3e-129 460.7
Bhi06g00518 . 7 544 MAP Kinase Kinase Kinase Kinase AT4G10730 50.4 1.0e-139 495.0
Bhi09g03450 . 1 182 MAP Kinase Kinase Kinase Kinase AT4G10730 50.3 3.0e-46 184.5
Bhi06g00518 . 1 422 MAP Kinase Kinase Kinase Kinase AT1G70430 63.4 1.9e-150 530.4
Bhi11g01445 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01447 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01446 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 6.2e-133 472.2
Bhi11g01447 . 1 672 MAP Kinase Kinase Kinase Kinase AT1G79640 60.9 3.1e-218 755.7
Bhi11g01445 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 60.5 2.2e-216 749.6
Bhi11g01446 . 1 625 MAP Kinase Kinase Kinase Kinase AT1G79640 59.3 7.9e-206 714.5
Bhi06g00518 . 6 544 MAP Kinase Kinase Kinase Kinase AT1G79640 53.1 7.0e-154 542.0
Bhi09g03450 . 1 184 MAP Kinase Kinase Kinase Kinase AT1G79640 51.3 2.4e-45 181.4
Bhi06g00519 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00521 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00523 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00520 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00522 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00524 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00517 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi06g00518 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 4.1e-103 372.9
Bhi11g01445 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
Bhi11g01447 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
Bhi11g01446 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 5.4e-87 319.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88183 PF00069 Pkinase 6.30E-68 CL0016 Bhi PK