Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03470 ACCACTGCCTGAGGAATTTCTGTTTCGGCGATCTCTTCTTCAAAGGAATGGCATCCGCTTCCGATTCCCGTTCAAACGGCGTTTCCGGTAGAATCAAATCCGCCGCCACAATTATGCACTCCGAGAATCAATCCCTCCTTGCCGTAACTTGCTCGATACTGCTCTCTTACTTCTTTCTCTGCTTTCAATCTCTTGTTCTGATTGATAAACGAGATATTCTGATTGTTCGAGACAATGAAGTTGCTGTTGCTAAATAAACGTTGTTTTTAGCTTTAACATCTCCATTTCCTATCGAGTATCAGTTCCAGAATTGCGGAAGGCGCTGATTATGATGAAGGAAATTGGGGTGGAATTGGAGAGGGACAATCAGTCCAGGATGGTCAAGGAGCTTGAAAATTCTGTTGTCGAGCTGTTGAGTACCTATGAAAACTGTAACAATTTTTCATTGGCAATTCAGTCGGTTGGAAATATATATGAACCAAAAGAAGAGTTAACAGATTTTGGGAAACTACTTGATGATGAAGTTGCAAAAGTCAGCCAAGATTCATCTTCAAATTTGATGAACCATTCAATAATTCGGCAATTTAGAGAAGCTGTTTGGAATGTTCATCATGCAGGACAACCAATGCCAGGCGAGGAGAAGGAGGACATTGTGATGACCAGTACTCAGTGTAATCTATTGAATGTCACTTGCCCGTTAAGTGGAAAGCCTGTCATTGAATTAACAGAACCCGTTCGCAGTGCGGAATGCAAGCATGTATATGAAAAGGCAGCAATAATGCAGTACCTTAAATCCAAGAAATCTCGCGCTCAATGCCCAGTTGCAGCCTGTCCTAAGATGTTGCAGTCCGATAAGGTCGTGCCTGATCCGTTCTTACAGATTGAAATTGATGAACTGCGAAAGATATCTAGGCATTCTGATAGGATACAGGACTTCACAGAGCTTGATGCAGATTAGCACCACTGAAGTAGTTTCTTTTCCTCTTCCTTTTTGTTGTTTTTATTGGCGTTGTCATCCTTGTCGTCATTGTTGCTGGGGTCATTCTCTGGATCAAATGTTTTGCTTGGTAAGTTGAGCTAGTTGGGATGTATATGGTATCTATAGTTTGTCTATATCGTCTCGAGTTGAATGGAGAAATTTGGCTTCATTGACAAA 1156 41.52 MMKEIGVELERDNQSRMVKELENSVVELLSTYENCNNFSLAIQSVGNIYEPKEELTDFGKLLDDEVAKVSQDSSSNLMNHSIIRQFREAVWNVHHAGQPMPGEEKEDIVMTSTQCNLLNVTCPLSGKPVIELTEPVRSAECKHVYEKAAIMQYLKSKKSRAQCPVAACPKMLQSDKVVPDPFLQIEIDELRKISRHSDRIQDFTELDAD 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 87806317 87809347 + XM_039041132.1 Bhi09g03470 46087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03470 209 CDD SPL-RING_NSE2 121 189 IPR004181 GO:0008270
Bhi09g03470 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 202 IPR013083 -
Bhi09g03470 209 Pfam Zinc-finger of the MIZ type in Nse subunit 106 168 IPR004181 GO:0008270
Bhi09g03470 209 PANTHER UNCHARACTERIZED 11 197 IPR026846 GO:0000724|GO:0019789|GO:0030915
Bhi09g03470 209 SUPERFAMILY RING/U-box 121 192 - -
Bhi09g03470 209 ProSiteProfiles Zinc finger SP-RING-type profile. 104 192 IPR004181 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03470 K22756 NSMCE2, NSE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-] - csv:101211685 361.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g03469 Bhi-Chr9:87806255 Bhi09g03470 Bhi-Chr9:87806317 1.85E-158 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g172 . . . . Bpe09g00244 . . . . . Cma01g01231 . Car01g01052 . Sed04g2426 . Cpe02g00685 Bhi09g03470 Tan01g4359 Cmetu07g1823 . Hepe01g1414 . . Cla11g01732 Cam11g1801 Cec11g1822 Cco11g1828 Clacu11g1960 Cmu11g1770 . . . . . Lsi04g02041 Csa04g02311 Chy07g00047 Cme07g00565 . . . Bda12g00828 . . Bma07g01160 . . Cmo01g01284 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009484 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 4 1 31