Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi09g03484 TGTGAGAAAATTCCTGTATGGTTGCCTTCATTTTCTCAGGGAGGGAAAATTCGAACAAAAACCCCAGCAGCAAAATGCTTCACGAAATTAGGGAAAATTCGAGATTCGGTCCCTTTTGCCGTCTTCCTTCCGCATATTTGAATTTACACAACCACCTTCACTCATGACTTACAAAGGGAAGTCTTCTTGTTTGAATTATATTCATCTTCCAACATTTTTCTCATGCATTTCGAAAACCCAACACATTTTTGTATTGATCTGAGGTTGGATTGCAAATTTGGTAATCTGGGTTTGATTCATGTTAACTGCAATGCTTTAATGGCGAACAAAAATAGAGTTAGTAAAGTATGTTTAAGGACAAGAACAGTAAAAGTTGTTTCAAGGAGAAATTGTTAGGGTTTATAAACCTATTTGCTACCATATTTTCTTCCATGTTCATTGAGTTGTGTAAGGATGTTGGAATGGCATGGATTTATTGTACAAATAGGAAATGGGTTGTCTCTGATTTGTGTTTGTGTTCTTGGAGAATTGGAAATTCTGAAATACTTTTGAGATTTGTCATGGCTCATGGATGAAAACTAAAAAGGGCACATATGTTTACAGTCTGAATATTTGTAATAATAGTCCCTAAACTGCTATGAGATAATCAATGTCTTCCTTGGTGGTTGGAATTGGAAATGGAACTTATAAAGTTGGTTGTCAAGATTTCTTGATCATTCTTGTAGACAGAGTCAAAGCTCTTGAGGCTAAAATTGAATAAGATTAGTGCCGCCTGCTTGAATTCTTGGAATTTTGTGGACAATTGGATTCTAAGAGTGAATAAAGAAATGACTTTTTCTAGTTGGAAAGAGAAGGATGAAGAGATGGTAGGGGTTTCTTGCCAAACTATATATATTGGAAGGGAGAGAGCAAAGCCTTTGGCTTTTGACTGTCATTCTCATAAGAAATGGGAAACCTTCCCTTTCTGTTTTCTTTCTTCTTGTTTGCTCTCATAGTTTCTAGAAAGCATGGAACTGAAAGGAATGCAAGTGCAACACTGGTTAATGGTGGAAAGTGCAGAATTGGGGCCATTGTAGATCTGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGAATTTAACTCCTTGAGCAATCAAAATTTCAGTCTTATCATTAGAGACTCCAGAAGTGATCCCAATCTGGCAGCTCTTGCAGCTAAAGATCTCATCAGTGTACAACAAGTTCATGCTTTAATAGGGCGACAAACCTGGGAAATGGCATCCGTAGTTGCTGAGGTTGGAAATGAGAATCAGATTCCGGTACTAGCATTAGCTAATGAAATACCAAAGTGGGCAACCGAGAAGTTCAAATTTTTGGTCCAGGCTTCTCCTTCACAGTTAAATCAAATGAGGGCTATAGTTGGTATTATCAGTTCATGGGATTGGCATCTAGTCAATGTTATATATGAAGATAGAGATTTCTCAACCACTGGAGTTTTTCCTTATCTTGTACATGCCCTCAAAGATGTAGGAGCTGAAGTTAGTGATTTTGTTGGTCTCTCACAGTTTGATTCTAATTTATTTTCTAAAGAACTGGAGAAGCTAAGAAGAGGGTCATGCAGAATTTTTGTAGTGCATATGTCTTTCAAGTTGGCAGTGCGTCTATTTGAGATAGCAAACAAGATGGGAATGATGGGAAAGGACTATGTATGGATCACTACTGATTCTTTCACAAGCCTTGCACATTCTTTCAATGTTTCTATCAACCATGTACTACAAGGAGTTGTTGGAGTCAAGAGCTACTTCCCAGAAAGTAATCCTCCATATCATGAATTTTATCTTCGGTTTTGTCAGAGGTTTAGATCAAAGCATCTTGAGGAGGACAACAACGAGCCTGGTATTTTTGCAATACAGGCATATGATGCTGTAACAACAGCGGCTATGGCAATGAGTGAAATCCAAGAAAAGGGTAATCACTTGTTAGATAAGATAAAGCTCACTGACTTTCAAGGACTCGGTGGAAAAATTCAGTTTAAGGACAGAAAATTATACCCAGCTGATACTTATCAGATCATCAATGTGGTGGGGAGGAGTTATAGGGAACTAGGCTTCTGGTCTGATAAATTAGGCTTCTCAAGAGAGTTGAGGGAAAATTCGTCTTCGAGCTCATCGATGAAGGATCTCGGCGAAGTGTTTTGGCCAGGTGGATCTTCGATAACTCCAAGGGGATGGGTTGTACCAACAGATGCCAATTCATTGAGAATTGGGGTGCCATCTAGTTCCATGTTCAAACAGTATGTACATGTGGTCGAAGATCCTATGGGAAACAATTTAACCTTCAAAGGACTTGCAATCGATCTGTTTAAAGAAATCTTAAACTACCTTCCACTGCCACATGACTTCTATCATTTCAACGGAACTTATGATGATTTAGTGCAAGCAATCTACTTGAAGAAATATGATGCAGCAATAGGCGACATAGCAATGACGACAAAACGTGTAGAACATGCAGAATTTACACATCCCTACTCGGAAGCAGGACTGGTGATGATAGTTCCTACCAAAAAAGACACAAGCAATAAAGCATTGTTGTTCACAAAACCCTTTACAGTGACCATGTGGATTCTAATTGCTGTGGTAACTGCCTACAATGGCTTTGTTGTGTGGTTCATAGAACGAAATCACTGTCCTGAACATGAAGGTTCAATGTTTGATCAAGCTGGAGCCATGCTTTGCTCATCCTTCACCACTCTCTTCACCTTGCACGGTAATAGGCTGCACAGTAACTTATCGCGAATGGCTATGGTGGCTTGGCTATTTATGGCACTTGTGATAACTCAGACATACACAGCTAATCTTGCTAGCATGCTCATTATTCAAAAGTTTGAAGCGACGATATCGAATATTGAGACTCTCCAGAAAATAAATGCATCCGTGGGAGTAGGCAGAGGAACTTTTGTCAAGGGTTATTTGGAAGAAGTTCTCGACTTTCCTGCTGAAAGTGTAAAAAACTACACTACCCCGAACGATCTAGTTGACGCTCTCAGAAACCAGGAGATAGCAGCTGCATTTCTTGAAGTCCCTTTTGCGAAATTATTCCTTGCAAGATTTTGCAAGGAATTCATGATTTCTGGACCAACCTACGTTGTTGGAGGATTTGGATTTGCATTTCCGAGGGGCTCTCCTCTATTACGAGATGTTAACAAAGCTCTGCTTAAGGTATTTGAAACTGGGGAGTATAGAAAGTTAGAGGACAGCATGCTTGCTAAAGAGAAATGTGAGGATAGAGATGCAAAAGATGAAAGTTCAAGCCTGAGCACCAACAGCTTCTTTTTACTATTTGTATTGAGTGGAGGAGTATCAACAATAGCATTGACATTCTACACTATCAATGCTCATAAATCTTGTGTTCAACATAACGCTATTTGGAGATTAATGTTAGCTGTAACTAAGCGATGGAGAAATCACAGCAGGGGATTTTCTCGACGAGTAAGCGACGTGCCAGAAACCGACCCGAAGAACTTCCCAGATGCTACAAACTTGCAAATTCAGGTCTTGAAAACTGTACGTTAATTTCCATTGTTCAGACATGGTAGCTTTAGTTGGAAGCATGAAATGTAGGATCGGTATGACAATCGTAAATAGGGTTTAAGTAAATTCATTAAAATTAATAATTTGTTTTTCTAA 3685 39.05 MGNLPFLFSFFLFALIVSRKHGTERNASATLVNGGKCRIGAIVDLSSRIGKEEILAMHMAIEEFNSLSNQNFSLIIRDSRSDPNLAALAAKDLISVQQVHALIGRQTWEMASVVAEVGNENQIPVLALANEIPKWATEKFKFLVQASPSQLNQMRAIVGIISSWDWHLVNVIYEDRDFSTTGVFPYLVHALKDVGAEVSDFVGLSQFDSNLFSKELEKLRRGSCRIFVVHMSFKLAVRLFEIANKMGMMGKDYVWITTDSFTSLAHSFNVSINHVLQGVVGVKSYFPESNPPYHEFYLRFCQRFRSKHLEEDNNEPGIFAIQAYDAVTTAAMAMSEIQEKGNHLLDKIKLTDFQGLGGKIQFKDRKLYPADTYQIINVVGRSYRELGFWSDKLGFSRELRENSSSSSSMKDLGEVFWPGGSSITPRGWVVPTDANSLRIGVPSSSMFKQYVHVVEDPMGNNLTFKGLAIDLFKEILNYLPLPHDFYHFNGTYDDLVQAIYLKKYDAAIGDIAMTTKRVEHAEFTHPYSEAGLVMIVPTKKDTSNKALLFTKPFTVTMWILIAVVTAYNGFVVWFIERNHCPEHEGSMFDQAGAMLCSSFTTLFTLHGNRLHSNLSRMAMVAWLFMALVITQTYTANLASMLIIQKFEATISNIETLQKINASVGVGRGTFVKGYLEEVLDFPAESVKNYTTPNDLVDALRNQEIAAAFLEVPFAKLFLARFCKEFMISGPTYVVGGFGFAFPRGSPLLRDVNKALLKVFETGEYRKLEDSMLAKEKCEDRDAKDESSSLSTNSFFLLFVLSGGVSTIALTFYTINAHKSCVQHNAIWRLMLAVTKRWRNHSRGFSRRVSDVPETDPKNFPDATNLQIQVLKTVR 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 87950785 87955830 - XM_039042629.1 Bhi09g03484 46101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi09g03484 874 PIRSF IGluLR_plant 2 866 IPR017103 -
Bhi09g03484 874 Gene3D - 156 312 - -
Bhi09g03484 874 SUPERFAMILY Periplasmic binding protein-like I 35 429 IPR028082 -
Bhi09g03484 874 PANTHER GLUTAMATE RECEPTOR 32 863 - -
Bhi09g03484 874 Gene3D - 638 735 - -
Bhi09g03484 874 Gene3D - 326 436 - -
Bhi09g03484 874 Gene3D - 437 556 - -
Bhi09g03484 874 Gene3D - 35 155 - -
Bhi09g03484 874 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 863 - -
Bhi09g03484 874 SMART GluR_14 438 774 IPR001320 GO:0015276|GO:0016020
Bhi09g03484 874 CDD GluR_Plant 437 772 - -
Bhi09g03484 874 Pfam Ligand-gated ion channel 770 802 IPR001320 GO:0015276|GO:0016020
Bhi09g03484 874 Pfam Receptor family ligand binding region 55 379 IPR001828 -
Bhi09g03484 874 Gene3D - 736 768 - -
Bhi09g03484 874 SUPERFAMILY Periplasmic binding protein-like II 415 769 - -
Bhi09g03484 874 CDD PBP1_GABAb_receptor_plant 38 399 IPR044440 -
Bhi09g03484 874 Pfam Bacterial extracellular solute-binding proteins, family 3 460 769 IPR001638 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi09g03484 - - - csv:101209950 1441.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g03482 Bhi-Chr9:87937731 Bhi09g03484 Bhi-Chr9:87950785 0 dispersed
Bhi09g03484 Bhi-Chr9:87950785 Bhi04g00082 Bhi-Chr4:2154188 1.06E-139 dispersed
Bhi09g03483 Bhi-Chr9:87937731 Bhi09g03484 Bhi-Chr9:87950785 0 tandem
Bhi09g03484 Bhi-Chr9:87950785 Bhi09g03485 Bhi-Chr9:87959466 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68