Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00180 TTTGTTTTTTCTAATAAGCGCTTCCCTCCACATCTATATCCGAACCAAGTTCCCTCCCTTTCAACCTTCCCTCGTTTTCTGCTCTCGTTTTCTCTCTGAATCTCTCCCGTTTTTCTCCATTTTTTCTGAGAATCCAAACGCTCAGATCTCTCCAAGCTCCTCCTTCTTCTTCCACAAATTCCGTTCCTGTTCTTATTTCCATCAATTTTCCCCAATTGCACCTAAAACCCCAAACTCACTCCATTTTCCCTCTCTTTCTCTGACCTTCTAACCCAAATCCGCAATACACCAGGACCTCACTCGATCTTTGCTTCCCCTTCTCTTCAACCCTGCTCTATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGCCAACTGTCTGAGCAGATCATGCACTCTCTTAAGCGCCAACTCCCTTTCTCTTCCATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCCCCGACCCTCGACTTCCCGATCAAGAACCTGATGCCATCGTAGTCAAATCTTCATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCGACTGATAGAGCAGCTGGCCCTAGATTTACTGAGGTAGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGTTTACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTCGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTTGATGACAATTATGCTGGTCTACAGTTACATGTGCAGGCAGAAGTAGAGAACCTTACCATGGAGGAGCGTGGAATAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCCGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGACCCATAGATGTTTACCTTGTTAGTCAGTTTGAAGCTAAGTTTGAGGAGATAAATGCTGTGGAAGTGCCCCCAAGTTTGCCGTCAAGTTCAGGATTGAATGAAGCACCTGCAACAACGATCGTAACAGAGGATACCAGGGGAAAGGAAATTGAAACGCGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACTGACATGTGGAGAACTGAACCTAGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTACAGTATCGGCAATGTCAGCTCACCCCAAACCCAGACTCCACTTCCCAATGATGCACCTGATTTGCCTTCTGCTAATCCTTCTAGCAGCTGAAACTGTACGGGGTATCTGTTGAGATGTAACTGATAATCAATGCTACGGTTGTGCAAGAACTTGTATAATGTATGATCCTCGTGATCCTTACTTAGGTCCCCTGGGGACTGGAACCGATGATCTCAGATTGGAACCAGCCTCCATGATAATTCCTAGAGAAGGTCCTCTAACCAAAAAGCTGGAGAGGAAACTGCTGATGGGAAGGGCTACCGTGTACAGTTTAGTACAAAAATGTGTAGTAAATAAAATAGCCATTTCTGCATTGTAATATTCTTTGTTCCATGATAAGAATAGCATGTGCACGACATTCATTTAAGACAAGTTTAGTTTCAGTTCAATTTA 2076 44.22 MSGSRAPNSSGQLSEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLPDQEPDAIVVKSSLKRKSEVADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGSKSRFTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQLHVQAEVENLTMEERGIDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAVEVPPSLPSSSGLNEAPATTIVTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPSVEWNELGTFHEDYSIGNVSSPQTQTPLPNDAPDLPSANPSSS 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3975320 3983271 - XM_039045872.1 Bhi10g00180 46521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00180 465 MobiDBLite consensus disorder prediction 108 134 - -
Bhi10g00180 465 PANTHER TRANSCRIPTION FACTOR E2F 18 454 IPR015633 GO:0000978|GO:0006357
Bhi10g00180 465 Gene3D - 220 325 - -
Bhi10g00180 465 Coils Coil 155 175 - -
Bhi10g00180 465 MobiDBLite consensus disorder prediction 437 465 - -
Bhi10g00180 465 PANTHER TRANSCRIPTION FACTOR E2FB 18 454 - -
Bhi10g00180 465 MobiDBLite consensus disorder prediction 1 23 - -
Bhi10g00180 465 CDD E2F_DD 221 325 IPR032198 GO:0046983
Bhi10g00180 465 Pfam E2F/DP family winged-helix DNA-binding domain 141 204 IPR003316 GO:0005667|GO:0006355
Bhi10g00180 465 SMART E2F_TDP_2 139 204 IPR003316 GO:0005667|GO:0006355
Bhi10g00180 465 Pfam E2F transcription factor CC-MB domain 225 324 IPR032198 GO:0046983
Bhi10g00180 465 Gene3D - 133 206 IPR036388 -
Bhi10g00180 465 MobiDBLite consensus disorder prediction 89 134 - -
Bhi10g00180 465 MobiDBLite consensus disorder prediction 1 53 - -
Bhi10g00180 465 Coils Coil 228 255 - -
Bhi10g00180 465 SUPERFAMILY E2F-DP heterodimerization region 223 325 IPR037241 -
Bhi10g00180 465 SUPERFAMILY Winged helix DNA-binding domain 139 202 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00180 K06620 E2F3; transcription factor E2F3 - csv:101219318 876.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00180 Bhi-Chr10:3975320 Bhi10g00182 Bhi-Chr10:3975320 0 dispersed
Bhi10g00180 Bhi-Chr10:3975320 Bhi10g00181 Bhi-Chr10:3975320 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2079 PF16421 E2F_CC-MB 1.90E-34 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00180 Bhi_Chr10 FPKM 0.391087 0.0 2.381057 2.861047 3.814029 4.8023 4.378255 0.097419 0.21888 0.225888