Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00181 TTGTTTTTTCTAATAAGCGCTTCCCTCCACATCTATATCCGAACCAAGTTCCCTCCCTTTCAACCTTCCCTCGTTTTCTGCTCTCGTTTTCTCTCTGAATCTCTCCCGTTTTTCTCCATTTTTTCTGAGAATCCAAACGCTCAGATCTCTCCAAGCTCCTCCTTCTTCTTCCACAAATTCCGTTCCTGTTCTTATTTCCATCAATTTTCCCCAATTGCACCTAAAACCCCAAACTCACTCCATTTTCCCTCTCTTTCTCTGACCTTCTAACCCAAATCCGCAATACACCAGGACCTCACTCGATCTTTGCTTCCCCTTCTCTTCAACCCTGCTCTATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGCCAACTGTCTGAGCAGATCATGCACTCTCTTAAGCGCCAACTCCCTTTCTCTTCCATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCCCCCGACCCTCGACTTCCCGATCAAGAACCTGATGCCATCGTAGTCAAATCTTCACAGTTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCGACTGATAGAGCAGCTGGCCCTAGATTTACTGAGGTAGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGTTTACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTCGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTTGATGACAATTATGCTGGTCTACAGTTACATGTGCAGGCAGAAGTAGAGAACCTTACCATGGAGGAGCGTGGAATAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCCGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTCCTCAGAAGCACCATGGGACCCATAGATGTTTACCTTGTTAGTCAGTTTGAAGCTAAGTTTGAGGAGATAAATGCTGTGGAAGTGCCCCCAAGTTTGCCGTCAAGTTCAGGATTGAATGAAGCACCTGCAACAACGATCGTAACAGAGGATACCAGGGGAAAGGAAATTGAAACGCGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACTGACATGTGGAGAACTGAACCTAGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTACAGTATCGGCAATGTCAGCTCACCCCAAACCCAGACTCCACTTCCCAATGATGCACCTGATTTGCCTTCTGCTAATCCTTCTAGCAGCTGAAACTGTACGGGGTATCTGTTGAGATGTAACTGATAATCAATGCTACGGTTGTGCAAGAACTTGTATAATGTATGATCCTCGTGATCCTTACTTAGGTCCCCTGGGGACTGGAACCGATGATCTCAGATTGGAACCAGCCTCCATGATAATTCCTAGAGAAGGTCCTCTAACCAAAAAGCTGGAGAGGAAACTGCTGATGGGAAGGGCTACCGTGTACAGTTTAGTACAAAAATGTGTAGTAAATAAAATAGCCATTTCTGCATTGTAATATTCTTTGTTCCATGATAAGAATAGCATGTGCACGACATTCATTTAAGACAAGTTTAGTTTCAGTTCAATTTA 2078 44.27 MSGSRAPNSSGQLSEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLPDQEPDAIVVKSSQLKRKSEVADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGSKSRFTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQLHVQAEVENLTMEERGIDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAVEVPPSLPSSSGLNEAPATTIVTEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPSVEWNELGTFHEDYSIGNVSSPQTQTPLPNDAPDLPSANPSSS 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3975320 3983270 - XM_039045871.1 Bhi10g00181 46522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00181 466 Pfam E2F transcription factor CC-MB domain 226 325 IPR032198 GO:0046983
Bhi10g00181 466 PANTHER TRANSCRIPTION FACTOR E2F 18 455 IPR015633 GO:0000978|GO:0006357
Bhi10g00181 466 MobiDBLite consensus disorder prediction 438 466 - -
Bhi10g00181 466 PANTHER TRANSCRIPTION FACTOR E2FB 18 455 - -
Bhi10g00181 466 Coils Coil 229 256 - -
Bhi10g00181 466 CDD E2F_DD 222 326 IPR032198 GO:0046983
Bhi10g00181 466 MobiDBLite consensus disorder prediction 1 23 - -
Bhi10g00181 466 MobiDBLite consensus disorder prediction 90 135 - -
Bhi10g00181 466 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Bhi10g00181 466 Coils Coil 156 176 - -
Bhi10g00181 466 MobiDBLite consensus disorder prediction 1 53 - -
Bhi10g00181 466 Gene3D - 134 207 IPR036388 -
Bhi10g00181 466 Gene3D - 221 326 - -
Bhi10g00181 466 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Bhi10g00181 466 MobiDBLite consensus disorder prediction 109 135 - -
Bhi10g00181 466 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Bhi10g00181 466 SUPERFAMILY E2F-DP heterodimerization region 224 326 IPR037241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00181 K06620 E2F3; transcription factor E2F3 - csv:101219318 882.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00181 Bhi-Chr10:3975320 Bhi02g00388 Bhi-Chr2:7466028 1.05E-10 dispersed
Bhi10g00180 Bhi-Chr10:3975320 Bhi10g00181 Bhi-Chr10:3975320 0 tandem
Bhi10g00181 Bhi-Chr10:3975320 Bhi10g00182 Bhi-Chr10:3975320 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi11g01013 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-60 230.7
Bhi11g01014 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 9.9e-60 228.0
Bhi10g00182 . 20 446 E2F-DP Transcription Factor Family AT5G22220 58.0 5.9e-115 412.1
Bhi10g00180 . 20 449 E2F-DP Transcription Factor Family AT5G22220 57.6 1.3e-114 411.0
Bhi10g00181 . 20 450 E2F-DP Transcription Factor Family AT5G22220 57.5 3.2e-113 406.4
Bhi03g01787 . 29 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-96 350.9
Bhi03g01786 . 29 461 E2F-DP Transcription Factor Family AT5G22220 50.1 1.8e-95 347.4
Bhi03g01786 . 11 454 E2F-DP Transcription Factor Family AT2G36010 55.0 1.3e-120 431.0
Bhi10g00181 . 21 445 E2F-DP Transcription Factor Family AT2G36010 55.2 7.0e-119 425.2
Bhi03g01787 . 11 453 E2F-DP Transcription Factor Family AT2G36010 54.7 1.2e-118 424.5
Bhi10g00182 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-118 423.7
Bhi10g00180 . 21 444 E2F-DP Transcription Factor Family AT2G36010 55.4 4.5e-118 422.5
Bhi04g00158 . 151 404 E2F-DP Transcription Factor Family AT1G47870 54.3 2.1e-65 247.3
Bhi10g00182 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 7.6e-63 238.8
Bhi10g00181 . 139 419 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi10g00180 . 138 418 E2F-DP Transcription Factor Family AT1G47870 50.2 4.2e-61 233.0
Bhi08g01451 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.4 5.7e-106 382.1
Bhi08g01452 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.3 7.4e-106 381.7
Bhi08g01449 CCT 3 358 E2F-DP Transcription Factor Family AT3G48160 55.3 5.3e-96 349.0
Bhi08g01450 . 3 356 E2F-DP Transcription Factor Family AT3G48160 55.4 2.6e-95 346.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2080 PF16421 E2F_CC-MB 2.00E-34 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00181 Bhi_Chr10 FPKM 25.666904 25.951742 18.287828 18.68854 34.797695 28.636879 35.713619 7.536217 8.296387 9.345665