Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00204 ATACAGTACTTTCGTTTTCATCTGAAAAGACCAGCAAAATTTGTTCACTTTATTCAATTCAGACTGTTGGAGGGAAAAAAAAAAGCGTATATGTATATATGTATATATTTCAAACCAAATCATAATTTTGTTCTTTTTACTGTTGGAATCTTGAACACTGGTTAACAAATTGTGAGATCTTTTGATATTTTTCTCGATAAATCTGCCAAGAAAAGAAAAAAACTGTTTTTAAAAAGTATGTATTTTATGAGGGATTTTTCATCTGGGTTTCTAACCAAACCCTCAGATGTGTACAATTTTGCATTAAAAAAGAGCTGGTATCGTGGCAATTTTGAGAGAAAATTTGAGGTAAGTGTTCCATGCAACAGCATGTTCACACTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGCCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGCAAGGACAGAGCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCAGAAGAGACAGCGTGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACGGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAAGTTTGAATTTGACCAGAAATCATCACAGTCCATCCAAACTGTCCAATGGGGTTCTGCCACCTGTTAATTCTCTAAAGTTGATGATGATGTGTCAATAGATCATAAAATACTAATAAAACACCCCTTTTTTAAAAATTAATGTGTATTAATTTAGATGCTATTATTAAATTCCAACAAAAAATGAGGTTGATGATCAAGTACTCCTGCCCTGACCCCTCACGTTCTCTATAGGAAAGGAAATTACTTTGATAACCTCACCCCCCCCCATTGTCCTTTATTTATTAATAGGTGTGATGTGATTTTATTCCCCTCTCTCCTTGTTAACAAGTGAGATTAATGAATGATATTACCATATTTATAAATCTA 1155 36.45 MYFMRDFSSGFLTKPSDVYNFALKKSWYRGNFERKFEVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRQKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4368026 4373790 - XM_039046404.1 Bhi10g00204 46545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00204 183 Pfam YABBY protein 37 174 IPR006780 GO:0007275
Bhi10g00204 183 PANTHER PROTEIN YABBY 6-RELATED 33 183 IPR006780 GO:0007275
Bhi10g00204 183 MobiDBLite consensus disorder prediction 71 107 - -
Bhi10g00204 183 Gene3D High mobility group box domain 122 169 IPR036910 -
Bhi10g00204 183 MobiDBLite consensus disorder prediction 108 122 - -
Bhi10g00204 183 SUPERFAMILY HMG-box 123 167 IPR036910 -
Bhi10g00204 183 PANTHER AXIAL REGULATOR YABBY 2-RELATED 33 183 - -
Bhi10g00204 183 MobiDBLite consensus disorder prediction 71 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00204 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101222154 266.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00204 Bhi-Chr10:4368026 Bhi10g00206 Bhi-Chr10:4368030 5.14E-105 dispersed
Bhi10g00203 Bhi-Chr10:4368026 Bhi10g00204 Bhi-Chr10:4368026 3.21E-136 tandem
Bhi10g00204 Bhi-Chr10:4368026 Bhi10g00205 Bhi-Chr10:4368030 1.53E-99 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g01473 . 5 173 C2C2-YABBY Transcription Factor Family AT1G69180 55.2 6.0e-47 184.9
Bhi07g01472 . 5 171 C2C2-YABBY Transcription Factor Family AT1G69180 55.3 1.0e-46 184.1
Bhi12g00406 . 84 243 C2C2-YABBY Transcription Factor Family AT2G45190 58.9 3.1e-42 169.1
Bhi10g00206 . 1 172 C2C2-YABBY Transcription Factor Family AT1G08465 66.7 3.2e-56 215.7
Bhi10g00203 . 38 185 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 8.8e-46 181.0
Bhi02g00976 . 6 177 C2C2-YABBY Transcription Factor Family AT1G08465 55.6 1.7e-44 176.8
Bhi10g00205 . 1 141 C2C2-YABBY Transcription Factor Family AT1G08465 65.0 1.4e-43 173.7
Bhi12g00406 . 40 233 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 9.1e-43 171.0
Bhi10g00204 . 38 183 C2C2-YABBY Transcription Factor Family AT1G08465 63.3 1.5e-42 170.2
Bhi12g00406 . 51 242 C2C2-YABBY Transcription Factor Family AT4G00180 55.9 3.9e-50 195.7
Bhi07g01745 . 1 174 C2C2-YABBY Transcription Factor Family AT1G23420 50.8 3.0e-39 159.8
Bhi02g00976 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 72.3 4.1e-63 238.4
Bhi06g01929 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 3.0e-61 232.3
Bhi10g00206 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 61.0 4.4e-49 191.8
Bhi12g00406 . 42 205 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 2.5e-44 176.0
Bhi10g00203 . 38 185 C2C2-YABBY Transcription Factor Family AT2G26580 61.5 8.4e-40 161.0
Bhi10g00204 . 38 183 C2C2-YABBY Transcription Factor Family AT2G26580 58.2 2.3e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2085 PF04690 YABBY 1.50E-56 CL0114 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00204 Bhi_Chr10 FPKM 14.254437 16.387165 6.486921 7.416681 12.829856 12.981489 14.637626 5.758743 5.121041 5.595469