Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00208 AACCCACAAAGAATAGAAAACGTTCGCAAGTGAGGAGCCCGTCTCTATGCGTCGGGGCAGATGACGTGGCATAATACTTTTGTACGACACCCGGCCTTCACCCGCCAGAATCCTCGAGCCATTGCAATCTCCTCCTAGCTTCCAAGGCACGGAGGCCGCCGACGGTCTTCGACCAAGACGAACCAAAAGAGCTCAGTTGAAAGGTGAACTTGTCAGTGGAGTGGCGTTTCTTGCCTTTTGTACTCCGCCTTACATTCTACAATGGCGGACATTAGAAAATGGTTCATGAAAGCACACGATAAAGAGAACGGCAGTGGGTCAAAGAAAGCAAAACCTGCTCCAAGCAACTCAGAGAAATCCGCTACAGCTGAACTACAGTCCGGAAAAACAGGGCTGAGTGGTGGGGAAAGCACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAAAAGCAGAAGGCCAATGATACAAAAGAAACAGAGGAATCCCCGATCAAACGAAAGTCTCCACAGGATACTAAGGAATCACCCACCAAAAGAAAGTTTCAAACAGATAATGAGGAATCACCGAAGGCGCTGCCTTTAAAAAAATCAAACAAAATTGATGACGATGCTGTTTTTTCTAGTTCTAGAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTGCACAGAAATCTGTAGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACTGATTCTTCTCTGAAGTCTAGTGGAAGGGGTAAGGGGGGAAGAGGTTCATCTGCTACAACCGTTGGTGGTAGAGGCAGAGGTGGTGGACGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCGGAGTGTTTAGCTGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGGCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTGCATCAGGCAAAAAAGCTCCTCCAAAGCAACATCCTAAAAAATCTGTGGTTAAGTCCATGGAATCTCCGACAGAGAAAAATTTCCAGAAAGTACAAGCAAAGTCCCGCAAAGATTTGACTGCTGGTGCTTCACCCGCTAAGCAAAAAAGCCGAACAGCTGAATTCTCTAACCTAACATGGACAGAAAAATACAGGCCAAAGGTTCCAAATGACATTATTGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAATGAAAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTATTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAATGCCAGCGACAATCGGGGTAAGTCAGATGCTAAAATTCACAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCGCTGCATTTCAGAATGAATCAGCCAAAACATCCCAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCAAGCATTAAAATGTCCAAAATACCAATTATCTGCATCTGTAATGATCGTTACAGCCAGAAGCTGAAAAGCCTCGTGAACTATTGTCTTATTCTCAGCTATAGGAAACCTACAAAACAACAGATGGCAAAACGACTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTAAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAATATGATGATATTCGCCAACGGCTTCTGAGCAGTATGAAAGATGAAGATATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTTAATTCCGGGAAGTTAAGGATGGATGAACGGATTGACCTCAGCATGAGTGATCTTGATCTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGGCCAAGCGCCATTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATTGCTCGTACAGCTGAATCAATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTGTAATACCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGTTGGGAAAAAATTCAACATCTGGAAAAAATATGAGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCGTCTCGTGAATCCTGTTCAGGGAGGGAACAGCTACGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTGCACACGCTGCCTAAGGATGAAGCTGTTAAAATTGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCTTTGGATGGCGTGGCCCCTGCAGTCAAGGCTGCTCTAACAAAGGCATACAAAGAAGTTAGCAAGACACACATGGTGCGGGCGGCAGATCTTATTACACTTCCTGGAATGAAAAAGGCCCCTAAGAAACGAATTGCAGCGATCCTAGAACCGACTGAGGATACAGTTGAAGGTGCTGGTGGAGACACATTGGCAGAAAGTGATGAGGAAAACTCTTTGGACAATGAGGGTGCAGACTCCGCAAACGGTGAGAAGCTGCAACTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTATGGAAAATTCAAGCGCCAAGAAATCCGGTGGCAGAGGACGAGGAGGTAGAAGTTCCCAAGCTTCAGAGAAGAAAGGTGGCGGTCGAGGTTCAGGATCTGCTACAAAGAGGAAAAGATGAAATAAAACGCTTCAAGAACTTCGGGTAATGTTATGTTTACCTTCGTCCTATGCATGCATAAGTTTGCTGGTTAATGTGTTTGAACTGCTAGAAGAATACATAACCTTGTATATGGCACATGTTACATGGGCCTTTTTGACGTACAAGAGAAACATGCTTTTGTATCAACCATTTTGACTTGCAATAGAAATGAGACCAATTCACCCGAAGAACGAGATTCGGTTTTAATGAAATTATTATCGGTTTTTTAGGGC 3425 42.86 MADIRKWFMKAHDKENGSGSKKAKPAPSNSEKSATAELQSGKTGLSGGESTGRRITSKYFASEKQKANDTKETEESPIKRKSPQDTKESPTKRKFQTDNEESPKALPLKKSNKIDDDAVFSSSRKNMSEVTPNKKLKSGSGKGIAQKSVEIEASDDEETKGTDSSLKSSGRGKGGRGSSATTVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASECLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGKKAPPKQHPKKSVVKSMESPTEKNFQKVQAKSRKDLTAGASPAKQKSRTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNENFLDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIHKGIGGSNANSIKELISNESLHFRMNQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSYRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLSSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAISKDDNGIKRMDLIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRETLEQGERNFNRFGAWLGKNSTSGKNMRLLEDLHVHILASRESCSGREQLRVENLTLFLKRLTEPLHTLPKDEAVKIVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDTVEGAGGDTLAESDEENSLDNEGADSANGEKLQLELQSLNKKGMQVQLDLKGMENSSAKKSGGRGRGGRSSQASEKKGGGRGSGSATKRKR 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4454928 4467553 + XM_039045270.1 Bhi10g00208 46549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00208 969 MobiDBLite consensus disorder prediction 199 214 - -
Bhi10g00208 969 SMART AAA_5 403 541 IPR003593 -
Bhi10g00208 969 CDD BRCT_RFC1 215 293 - -
Bhi10g00208 969 Pfam Replication factor RFC1 C terminal domain 680 842 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Bhi10g00208 969 MobiDBLite consensus disorder prediction 64 122 - -
Bhi10g00208 969 Gene3D - 612 722 - -
Bhi10g00208 969 SMART BRCT_7 217 295 IPR001357 -
Bhi10g00208 969 MobiDBLite consensus disorder prediction 1 215 - -
Bhi10g00208 969 MobiDBLite consensus disorder prediction 149 164 - -
Bhi10g00208 969 PANTHER REPLICATION FACTOR C SUBUNIT 1 19 940 - -
Bhi10g00208 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 600 IPR027417 -
Bhi10g00208 969 PIRSF RFC1 1 942 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Bhi10g00208 969 CDD HLD_clamp_RFC 540 598 - -
Bhi10g00208 969 Gene3D - 540 610 - -
Bhi10g00208 969 Pfam BRCA1 C Terminus (BRCT) domain 217 292 IPR001357 -
Bhi10g00208 969 MobiDBLite consensus disorder prediction 22 63 - -
Bhi10g00208 969 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 19 940 - -
Bhi10g00208 969 MobiDBLite consensus disorder prediction 1 20 - -
Bhi10g00208 969 Pfam ATPase family associated with various cellular activities (AAA) 407 519 IPR003959 GO:0005524|GO:0016887
Bhi10g00208 969 CDD AAA 392 533 - -
Bhi10g00208 969 Gene3D BRCT domain 192 294 IPR036420 -
Bhi10g00208 969 MobiDBLite consensus disorder prediction 873 969 - -
Bhi10g00208 969 ProSiteProfiles BRCT domain profile. 215 293 IPR001357 -
Bhi10g00208 969 SUPERFAMILY post-AAA+ oligomerization domain-like 611 756 IPR008921 GO:0003677|GO:0006260
Bhi10g00208 969 MobiDBLite consensus disorder prediction 295 343 - -
Bhi10g00208 969 MobiDBLite consensus disorder prediction 909 932 - -
Bhi10g00208 969 Gene3D - 351 539 IPR027417 -
Bhi10g00208 969 SUPERFAMILY BRCT domain 215 294 IPR036420 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00208 Bhi-Chr10:4454928 Bhi10g00210 Bhi-Chr10:4455153 0 dispersed
Bhi10g00207 Bhi-Chr10:4454928 Bhi10g00208 Bhi-Chr10:4454928 0 tandem
Bhi10g00208 Bhi-Chr10:4454928 Bhi10g00209 Bhi-Chr10:4454928 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00208 K10754 - csv:101204361 1655.96