Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00305 TAGCTCTTGAATTTGAGTTACCAAAAAGGTCGTTGCTTTTCTCCAATTACTGTGCTCTCTCAGTATGAGAATCGCTCAACAACTGAATTGACTCTTCAATTCTTCTCTTTCTCTTTCTGTTTTTCCTTTTTTCCCAGATTCTCAGCGGGTGTTTCCTGAATCTAGGGCTTTGGATTTCCAGAATTTTCCATCCAAAAGGTATGCAGTCAAAGTCTAAAAGCGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTGGTTATACTGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCCCCGCCAGCAGGAGGAAATTTGTCCAATTCAACGTCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGACGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCTTGCTGTTTCTGCTGCGCCTACAGTGCATGGTGGATGTGTCACACAACCTCCTCAGCTTGAACTTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAAGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAAAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGGTTTGCCAAGAAAAATGAAGCTAATTCCTTGAGTTCAACAATGAAGGACAAGGACTCCGCTTCTGGTCAAGCTATCTCATCGCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAGTGGACAACAAGAAGCAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAACCACGGTAGCCAATTTCACAACTACAGTAGCTTCCAAGCTTCTTCATACGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTATCTCAGAAAATCAGGCTGGACAGAGGCGTCTTGCCATCAAGTGAACCTCCTGGTTGCAAAAATATGGGGTGCCCCTAGGTTATCTTTGGGGCTGCATTCCCTGGCAGTTTTCTGCTAGGCGGCAAATCATTCTTGGCTTTGTTCTGGTGCTTGTTTCTTAATCGTAAAGGAGATGGATGATATAAGTTGGCCATTTGGACCCTAGTTCTAGATGCTTCATTCCATCAACCTCTCCCCCATTTTTAACTTGTGTATAGAACAGACTCCATAGATTTCAAACAGTGCTCTTTTTAATTTCCAAACCACCTTGCTTAATCGAATGCATAACTGTCATGTACTCGTGAGTGTGTCTAGAACTTTGATCCATAATTTGGTTGCTAATTTCATCAAAGTTTCCTCAGTACCAAATATATTTCTTGCTCTA 1588 43.83 MQSKSKSVNQLESEPPNMQQTSGYTEPWWRSIGYNHISPPAGGNLSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQLAVSAAPTVHGGCVTQPPQLELACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSLSSTMKDKDSASGQAISSHSAGSSGSEAAPCALAETWNSSSGQQEARTQLHEAYEARSYVNHGSQFHNYSSFQASSYGLRSGERGEDGDCSGQQRSISENQAGQRRLAIK 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6542622 6547792 - XM_039045662.1 Bhi10g00305 46646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00305 335 ProSitePatterns NF-YA/HAP2 subunit signature. 165 185 IPR018362 GO:0003677|GO:0016602
Bhi10g00305 335 MobiDBLite consensus disorder prediction 220 250 - -
Bhi10g00305 335 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 217 IPR001289 GO:0003700|GO:0006355
Bhi10g00305 335 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Bhi10g00305 335 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Bhi10g00305 335 MobiDBLite consensus disorder prediction 302 335 - -
Bhi10g00305 335 MobiDBLite consensus disorder prediction 1 28 - -
Bhi10g00305 335 MobiDBLite consensus disorder prediction 200 254 - -
Bhi10g00305 335 Gene3D - 160 222 - -
Bhi10g00305 335 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 30 322 IPR001289 GO:0003700|GO:0006355
Bhi10g00305 335 MobiDBLite consensus disorder prediction 200 214 - -
Bhi10g00305 335 MobiDBLite consensus disorder prediction 40 67 - -
Bhi10g00305 335 MobiDBLite consensus disorder prediction 1 85 - -
Bhi10g00305 335 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Bhi10g00305 335 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Bhi10g00305 335 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 30 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00305 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101212961 597.816
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00305 Bhi-Chr10:6542622 Bhi03g00154 Bhi-Chr3:3804248 1.55E-33 dispersed
Bhi10g00304 Bhi-Chr10:6542622 Bhi10g00305 Bhi-Chr10:6542622 0 tandem
Bhi10g00305 Bhi-Chr10:6542622 Bhi10g00306 Bhi-Chr10:6542622 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi10g00303 CCT,ECH 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00306 . 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00302 . 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00304 . 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00305 . 18 223 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.2 2.5e-49 193.4
Bhi10g00303 CCT,ECH 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi10g00306 . 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi10g00302 . 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi10g00304 . 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi02g01538 CCT,ECH 58 231 CCAAT-HAP2 Transcription Factor Family AT3G20910 60.8 9.3e-45 178.3
Bhi03g00154 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.2 7.9e-50 194.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2098 PF02045 CBFB_NFYA 1.80E-26 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00305 Bhi_Chr10 FPKM 0.752691 0.444346 3.676971 4.152112 4.182859 4.381097 4.698482 3.206374 2.930979 3.026905